View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9024_low_1 (Length: 1537)

Name: NF9024_low_1
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9024_low_1
NF9024_low_1
[»] chr8 (3 HSPs)
chr8 (376-725)||(12934377-12934726)
chr8 (1118-1291)||(12933811-12933984)
chr8 (1231-1268)||(36999937-36999974)
[»] chr7 (3 HSPs)
chr7 (495-725)||(15300163-15300393)
chr7 (205-295)||(4836354-4836444)
chr7 (1261-1298)||(6692086-6692123)
[»] chr4 (5 HSPs)
chr4 (495-725)||(28607996-28608227)
chr4 (495-725)||(14177647-14177877)
chr4 (1118-1291)||(28608621-28608794)
chr4 (1141-1291)||(14177081-14177231)
chr4 (1230-1283)||(20706182-20706234)
[»] chr5 (3 HSPs)
chr5 (202-295)||(33811019-33811112)
chr5 (202-295)||(33815937-33816030)
chr5 (1261-1298)||(19944036-19944073)
[»] chr6 (2 HSPs)
chr6 (1261-1298)||(796698-796735)
chr6 (1261-1298)||(8273092-8273129)


Alignment Details
Target: chr8 (Bit Score: 58; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 376 - 725
Target Start/End: Complemental strand, 12934726 - 12934377
Alignment:
Q  376 gcaatgtactctgcttcagttgttgaaagtgcaacgcacttttgcaacttagactgccatgatatagctccccctgaaaatgtaaacaaatatccagtac 475  Q
    ||||| || ||||| ||||||||||| |  || || || |||||||| ||||| ||||| |||| ||||||||||| ||| ||||||| |  ||| | |     
T  12934726 gcaatatattctgcctcagttgttgataaggctacacatttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaag 12934627  T
Q  476 tggattttctgttgtcaatgtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacc 575  Q
    | || |||||    || | ||||||||||||||| |||||||| ||||| ||||| |  | ||| |||||||||||||| || || |     | | | ||    
T  12934626 tagactttctaccatccaggtcacctgccatatccgcatctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcc 12934527  T
Q  576 tctcaggtacctgagtatccacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggt 675  Q
    | |||| ||||| |  |||||||| || |||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| ||     
T  12934526 tttcagatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggc 12934427  T
Q  676 ctagtacataccattgcatacatcaagcttccgactgctgaagaataagg 725  Q
    || || || ||||||||||||||||| || || |||||||| || |||||    
T  12934426 ctggtgcaaaccattgcatacatcaaactcccaactgctgaggagtaagg 12934377  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1118 - 1291
Target Start/End: Complemental strand, 12933984 - 12933811
Alignment:
Q  1118 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 1216  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  12933984 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 12933885  T
Q  1217 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1291  Q
    || ||||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933884 ct-caaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1231 - 1268
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  1231 ggttgctccatataaatctcctcttccaaatctccatg 1268  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr7 (Bit Score: 51; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 495 - 725
Target Start/End: Complemental strand, 15300393 - 15300163
Alignment:
Q  495 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 594  Q
    ||||||||||||||| |||| ||| ||||| ||||| || | ||| |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  15300393 gtcacctgccatatccgcatatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 15300294  T
Q  595 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 694  Q
    ||||| ||  ||||||||||||| ||||| |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || ||||||||||    
T  15300293 cacttcacaacttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcat 15300194  T
Q  695 acatcaagcttccgactgctgaagaataagg 725  Q
    ||||||| || || |||||||| || |||||    
T  15300193 acatcaaactcccaactgctgaggagtaagg 15300163  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 4836354 - 4836444
Alignment:
Q  205 atccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 295  Q
    ||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  4836354 atccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 4836444  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1261 - 1298
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  1261 tctccatgaagaaatgcagttttcacatccaactgctc 1298  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr4 (Bit Score: 48; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 495 - 725
Target Start/End: Original strand, 28607996 - 28608227
Alignment:
Q  495 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 594  Q
    |||||||||||||||||||||||| ||| | ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  28607996 gtcacctgccatatcagcatctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 28608095  T
Q  595 cacttgactgcttcccaatgttccttt-ccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgca 693  Q
    ||||| || |||||||||||||| ||| || |||||   |||||||||||| ||||| |||||||| ||||||||||| || || || || |||||||||    
T  28608096 cacttcacagcttcccaatgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgca 28608195  T
Q  694 tacatcaagcttccgactgctgaagaataagg 725  Q
    |||||||| || || |||||||| || |||||    
T  28608196 tacatcaaactcccaactgctgaggagtaagg 28608227  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 495 - 725
Target Start/End: Complemental strand, 14177877 - 14177647
Alignment:
Q  495 gtcacctgccatatcagcatctgtatagcccttcaagattggatcagatcctccaaagcacaaacaatctcccgtggtacctctcaggtacctgagtatc 594  Q
    ||||||||||||||| |||||||| ||||| ||||| || | ||  |||||||||||||| || || |     | | | ||| |||| ||||| |  |||    
T  14177877 gtcacctgccatatccgcatctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatc 14177778  T
Q  595 cacttgactgcttcccaatgttcctttccaggattttcaagaaacctgctgacaacaccaactgcgtgagcaatatcaggtctagtacataccattgcat 694  Q
    ||||| || |||||||| ||||| ||||| |||||   |||||||||||| ||||| |||||| | ||||||||||| || || || || ||||||||||    
T  14177777 cacttcacagcttcccagtgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcat 14177678  T
Q  695 acatcaagcttccgactgctgaagaataagg 725  Q
    ||||||| || || |||||||| || |||||    
T  14177677 acatcaaactcccaactgctgaggagtaagg 14177647  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1118 - 1291
Target Start/End: Original strand, 28608621 - 28608794
Alignment:
Q  1118 tcatgaatgaatcaaacttcatgtaccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-cta 1216  Q
    ||||||| || ||||| ||| | ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || ||     
T  28608621 tcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtctt 28608720  T
Q  1217 cttcaaatccttctggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1291  Q
    ||| |||||||||||||||  |||| || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608721 ctt-aaatccttctggttgaaccatgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1141 - 1291
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  1141 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 1239  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  1240 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 1291  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1230 - 1283
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  1230 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 1283  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 33811112 - 33811019
Alignment:
Q  202 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 295  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33811112 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33811019  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 295
Target Start/End: Complemental strand, 33816030 - 33815937
Alignment:
Q  202 cgaatccaatgatatctcacatcaatgtgtttggtccttgcatggtacatagagttcttgctaaggtctattgcactttgactgtcacaataga 295  Q
    |||||||||||||| |||||||| |||||||| | ||||| ||||||  | || |||||||| ||||  |||||||||||||| ||||||||||    
T  33816030 cgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaataga 33815937  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1261 - 1298
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  1261 tctccatgaagaaatgcagttttcacatccaactgctc 1298  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1261 - 1298
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  1261 tctccatgaagaaatgcagttttcacatccaactgctc 1298  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1261 - 1298
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  1261 tctccatgaagaaatgcagttttcacatccaactgctc 1298  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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