View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9024_low_10 (Length: 284)
Name: NF9024_low_10
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9024_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 43030819 - 43030549
Alignment:
| Q |
1 |
tgtttcttacaccttaatttgcatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030819 |
tgtttcttacaccttaatttgcatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttg |
43030720 |
T |
|
| Q |
101 |
gaatcatggtgcggtttcttgcaaagtataaggcctactcagatgggattgccacatgatgttggtgagaattctaccatatcttcatctttttctaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030719 |
gaatcatggtgcggtttcttgcaaagtataaggcctactcagatgggattgtcacatgatgttggtgagaattctaccatatcttcatctttttctaatg |
43030620 |
T |
|
| Q |
201 |
agatttttgtctcagccctcctcttattgggggagaagggctttgataatccaaagttaggccgataagta |
271 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43030619 |
agatttttgtctcggccctcctcttattgggggagaagggctttgataatccaaagttaggccgataagta |
43030549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 46527589 - 46527788
Alignment:
| Q |
1 |
tgtttcttacaccttaatttgcatctttatctatgcatcatttgggagcttacactattctccggatttaaataaaccacataagctgagtggtggcttg |
100 |
Q |
| |
|
||||||| ||||||||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46527589 |
tgtttctgacaccttaatttgtatatttagctatgtatcatttgggagcttacactattctccggatttaaaaaaaccacataagctgagtggtggcttg |
46527688 |
T |
|
| Q |
101 |
gaatcatggtgcggtttcttgcaaagtataaggcctactcagatgggattgccacatgatgttggtgagaattctaccatatcttcatctttttctaatg |
200 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||| | | | |||||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
46527689 |
gaatcatggagcggtttctatcaaagtataaggcctactcagatgggattatcgcttaatgttggtgagacttctaccatatcttcatatttttttaatg |
46527788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University