View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9024_low_3 (Length: 424)

Name: NF9024_low_3
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9024_low_3
NF9024_low_3
[»] chr8 (3 HSPs)
chr8 (165-306)||(2943873-2944014)
chr8 (335-413)||(2943782-2943860)
chr8 (18-166)||(2944308-2944442)
[»] scaffold0028 (1 HSPs)
scaffold0028 (63-94)||(77467-77498)
[»] chr5 (3 HSPs)
chr5 (63-102)||(19506114-19506153)
chr5 (66-99)||(3421323-3421356)
chr5 (65-101)||(39807100-39807136)
[»] chr1 (2 HSPs)
chr1 (66-95)||(3592836-3592865)
chr1 (63-99)||(41069077-41069113)
[»] chr7 (2 HSPs)
chr7 (63-99)||(9669244-9669280)
chr7 (63-99)||(24865056-24865092)
[»] chr4 (3 HSPs)
chr4 (63-99)||(11133202-11133238)
chr4 (63-99)||(13540268-13540304)
chr4 (63-99)||(32125998-32126034)
[»] chr3 (1 HSPs)
chr3 (63-99)||(17517698-17517734)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 165 - 306
Target Start/End: Complemental strand, 2944014 - 2943873
Alignment:
Q  165 tattattttttatataattaaagcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaat 264  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944014 tattattttttatataattaacgcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaat 2943915  T
Q  265 aacttccttcttcagcattaatgtaataggatcacactcgaa 306  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  2943914 aacttccttctttagcattaatgtaataggatcacactcgaa 2943873  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 2943860 - 2943782
Alignment:
Q  335 accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaataggatcaccttgtctaagtcc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2943860 accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaattggatcaccttgtctaagtcc 2943782  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 2944442 - 2944308
Alignment:
Q  18 ctaggtacaaatccgatacgaaattttgcatataaaagnnnnnnntatttaataaaaacattacattaatgttgataattttaaatttttaagaaagata 117  Q
    ||||||| ||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||              |||||||    
T  2944442 ctaggtataaatccgatacgaaattttgcatataaaagaaaaaaatatttaataaaaaaattacattaatgttgataat--------------aaagata 2944357  T
Q  118 atatccatgaaatatgtttaaatatttcacaatattacaaaaacaatta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944356 atatccatgaaatatgtttaaatatttcacaatattacaaaaacaatta 2944308  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 94
Target Start/End: Complemental strand, 77498 - 77467
Alignment:
Q  63 tatttaataaaaacattacattaatgttgata 94  Q
    ||||||||||||||||||||||||||||||||    
T  77498 tatttaataaaaacattacattaatgttgata 77467  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 19506153 - 19506114
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataattttaaa 102  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  19506153 tatttaatataaacactacattaatgttgataattttaaa 19506114  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 3421323 - 3421356
Alignment:
Q  66 ttaataaaaacattacattaatgttgataatttt 99  Q
    |||||| |||||||||||||||||||||||||||    
T  3421323 ttaatagaaacattacattaatgttgataatttt 3421356  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 39807100 - 39807136
Alignment:
Q  65 tttaataaaaacattacattaatgttgataattttaa 101  Q
    ||||||||||||||||  |||||||||||||||||||    
T  39807100 tttaataaaaacattatgttaatgttgataattttaa 39807136  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 95
Target Start/End: Original strand, 3592836 - 3592865
Alignment:
Q  66 ttaataaaaacattacattaatgttgataa 95  Q
    ||||||||||||||||||||||||||||||    
T  3592836 ttaataaaaacattacattaatgttgataa 3592865  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 41069077 - 41069113
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  41069077 tatttaatacaaacattacattaatgttgatgatttt 41069113  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 9669280 - 9669244
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  9669280 tatttaataaaaacactacattaatattgataatttt 9669244  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 24865092 - 24865056
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    |||||||||||||||||||||||||  ||||||||||    
T  24865092 tatttaataaaaacattacattaattctgataatttt 24865056  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 11133202 - 11133238
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  11133202 tattcaataaaaacattatattaatgttgataatttt 11133238  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 13540304 - 13540268
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  13540304 tatttaataaaaacactacattaatattgataatttt 13540268  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 32125998 - 32126034
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32125998 tatttaataaaaacattacattaatattgatattttt 32126034  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 17517698 - 17517734
Alignment:
Q  63 tatttaataaaaacattacattaatgttgataatttt 99  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  17517698 tatttaatagaaacattgcattaatgttgataatttt 17517734  T

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