View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9024_low_4 (Length: 405)
Name: NF9024_low_4
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9024_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 45132476 - 45132866
Alignment:
| Q |
1 |
ccaaaaccaaaacattttcaagtggaaaccaaatcaccttaattaattcttttaagagtctaatattttccttgtggtggttaaagacttatctttatgt |
100 |
Q |
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| T |
45132476 |
ccaaaaccaaaacattttcaagtggaaaccaaatcaccttaattc-----tttaagagtctaatattttccttgtggtggttaaagacttatctttatgt |
45132570 |
T |
|
| Q |
101 |
acatatgtgggaatgaacttgttctctttgaccatttgtgaaaaggcttttcttataatcataagagaattccttgattcttgtttcnnnnnnncaaaag |
200 |
Q |
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| T |
45132571 |
acttatgtgggaatgaacttgttctctttgaccatttgtgaaaaggcttttcttataatcataagagaattccttgattcttgtttctttttttcaaaag |
45132670 |
T |
|
| Q |
201 |
cttttttgtccttgtgatacaaaagtaaatacaccctcaccttcatttacaaactcacatgctagcctcttgggagccacatgttcccatcgtgccctca |
300 |
Q |
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| T |
45132671 |
cttttttgtccttgtgatacaaaagtaaatacaccctcaccttcatttacaaactcacatgctagcctcttgggagccacatgttcccatcgtgccctca |
45132770 |
T |
|
| Q |
301 |
aacctttccacgctggtttcttgtgggacctttctccattgaacattttaaccaaacaaggaatggatggtgaggatgaaaaaaccacggtgaacc |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45132771 |
aacctttccacgctggtttcttgtgggacctttctccattgaacattttaaccaaacaatgaatggatggtgaggatgaaaaaaccacggtgaacc |
45132866 |
T |
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