View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9024_low_7 (Length: 316)
Name: NF9024_low_7
Description: NF9024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9024_low_7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 32023595 - 32023281
Alignment:
| Q |
18 |
gaaactatatcctcaattattgtggtcacaaaggaataaaggatcaacaagaaaatatccaacaaacataagttatccaggagtttttcctttaaaactc |
117 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
32023595 |
gaaactatatcctcaattactgtggtcacaaaagaataaaggatcaacaaaaaaatatccaacaaacataagttattcaggagtttttcgtttaaaactc |
32023496 |
T |
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| Q |
118 |
aaccaaaaggtttaacttaacacaaagaggactatgagagagagag----------------ggcccctttccacccttattatattgccatccataaac |
201 |
Q |
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| T |
32023495 |
aaccaaaaggtttaacttatcacaaagaggactatgagagagagagagagagagagagagagggcccctttccacccttattatattgccatccataaac |
32023396 |
T |
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| Q |
202 |
catcatggcacatcaaccattcccatctttaacatgcttcatattttcattttaccatatagttaacaagtcaaatactaaccatcattcgcaaacaaaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32023395 |
catcatggcacatcaaccattcccatctttaacatgctttttattttcattttaccatatagttaacaagtcaaatactaaccatcattcgcaaacaaaa |
32023296 |
T |
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| Q |
302 |
tcaaaattcaagaat |
316 |
Q |
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|||||||||||||| |
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| T |
32023295 |
ccaaaattcaagaat |
32023281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 32032114 - 32031800
Alignment:
| Q |
18 |
gaaactatatcctcaattattgtggtcacaaaggaataaaggatcaacaagaaaatatccaacaaacataagttatccaggagtttttcctttaaaactc |
117 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
32032114 |
gaaactatatcctcaattactgtggtcacaaaagaataaaggatcaacaaaaaaatatccaacaaacataagttattcaggagtttttcgtttaaaactc |
32032015 |
T |
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| Q |
118 |
aaccaaaaggtttaacttaacacaaagaggactatgagagagagag----------------ggcccctttccacccttattatattgccatccataaac |
201 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32032014 |
aaccaaaaggtttaacttatcacaaagaggactatgagagagagagagagagagagagagagggcccctttccacccttattatattgccatccataaac |
32031915 |
T |
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| Q |
202 |
catcatggcacatcaaccattcccatctttaacatgcttcatattttcattttaccatatagttaacaagtcaaatactaaccatcattcgcaaacaaaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32031914 |
catcatggcacatcaaccattcccatctttaacatgcttattattttcattataccatatagttaacaagtcaaatactaaccatcattcgcaaacaaaa |
32031815 |
T |
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| Q |
302 |
tcaaaattcaagaat |
316 |
Q |
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|||||||||||||| |
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| T |
32031814 |
ccaaaattcaagaat |
32031800 |
T |
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