View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9025_low_2 (Length: 581)
Name: NF9025_low_2
Description: NF9025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9025_low_2 |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Original strand, 20135400 - 20135971
Alignment:
| Q |
11 |
gtgttggacggtttattcatttagatgaatgtacggcggatagagcgaggttggactacgctcgtattctcattttgacgcctcaaatagaaatcgtgaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20135400 |
gtgttggacggtttattcatttagatgaatgtacggcggatagagcgaggttggactacgctcgtattctcattttgatgcctcaaatagaaatcgtgaa |
20135499 |
T |
|
| Q |
111 |
ttcgactcctgaatttttgattgatgatcgcaagcattttattaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggaggag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
20135500 |
ttcgactcctgaatttttgattgatgatcgcaagcattttattaagttggtggaggaatggggatgttgtttgggggaggacgcttttatgacggaggag |
20135599 |
T |
|
| Q |
211 |
gtgaatgatgatagaccggaaacgttattgcagccacataatgttgacggtttagacgaagttcaaggggaatgggaattagatgacttgaaaaaggagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20135600 |
gtgaatgatgatagaccggaaacgttattgcagccacataatgttgacggtttagacgaagttcaaggggaatgggagttagatgacttgaaaaaggagt |
20135699 |
T |
|
| Q |
311 |
ggtgtgagcacgaaggaaggtgtcagcaaaccagaggcatcatcaacgaaacatactactgatctggaaggacacggggacagtgtgtctcatcaacgca |
410 |
Q |
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||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20135700 |
ggtgtgagcacgaaggaaggtgtcagcaaaccaaaggcattaccaacgaaacatactactgatctggaaggacacggggacagtgtgtctcatcaatgca |
20135799 |
T |
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| Q |
411 |
atcagctgtttc-aaaaaactgttttggaaccggtagccatnnnnnnnncagcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaa |
509 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20135800 |
atcagctgtttcaaaaaaactgttttggaaccggtagccataaaaaaaacagcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaa |
20135899 |
T |
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| Q |
510 |
aaaattctgcagcagctgatgttcatgtagcgctaaaaaatactacagcagctgatgtttctgatgtcaaaa |
581 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
20135900 |
aaaattctgcagcagctgatgttcatgtagtgctaaaaaatactacatcagctgatgtttctgatgtcaaaa |
20135971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 461 - 581
Target Start/End: Original strand, 20136001 - 20136121
Alignment:
| Q |
461 |
gcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaaaaaattctgcagcagctgatgttcatgtagcgctaaaaaatactacagcag |
560 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| | ||| ||||||| ||| ||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
20136001 |
gcagcagctgatgtttctgttagtaaatttttggaacctgtaacgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgcagcag |
20136100 |
T |
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| Q |
561 |
ctgatgtttctgatgtcaaaa |
581 |
Q |
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|||||||||||| | |||||| |
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| T |
20136101 |
ctgatgtttctgttatcaaaa |
20136121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 21309186 - 21309230
Alignment:
| Q |
154 |
aagttggtggaggaatggggatgttgtttgggggaggatgctttt |
198 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
21309186 |
aagttggtggaggaatgggggtgtaatttgggggaggatgctttt |
21309230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Complemental strand, 44356671 - 44356100
Alignment:
| Q |
11 |
gtgttggacggtttattcatttagatgaatgtacggcggatagagcgaggttggactacgctcgtattctcattttgacgcctcaaatagaaatcgtgaa |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44356671 |
gtgttggacggtttattcatttagatgaatgtacggcggatagagcgaggttggactacgctcgtattctcattttgatgcctcaaatagaaatcgtgaa |
44356572 |
T |
|
| Q |
111 |
ttcgactcctgaatttttgattgatgatcgcaagcattttattaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggaggag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44356571 |
ttcgactcctgaatttttgattgatgatcgcaagcattttattaagttggtggaggaatggggatgttgtttgggggaggacgcttttatgacggaggag |
44356472 |
T |
|
| Q |
211 |
gtgaatgatgatagaccggaaacgttattgcagccacataatgttgacggtttagacgaagttcaaggggaatgggaattagatgacttgaaaaaggagt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44356471 |
gtgaatgatgatagaccggaaacgttattgcagccacataatgttgacggtttagacgaagttcaaggggaatgggagttagatgacttgaaaaaggagt |
44356372 |
T |
|
| Q |
311 |
ggtgtgagcacgaaggaaggtgtcagcaaaccagaggcatcatcaacgaaacatactactgatctggaaggacacggggacagtgtgtctcatcaacgca |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44356371 |
ggtgtgagcacgaaggaaggtgtcagcaaaccaaaggcattaccaacgaaacatactactgatctggaaggacacggggacagtgtgtctcatcaatgca |
44356272 |
T |
|
| Q |
411 |
atcagctgtttcaa-aaaactgttttggaaccggtagccatnnnnnnnncagcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaa |
509 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44356271 |
atcagctgtttcaaaaaaactgttttggaaccggtagccataaaaaaaacagcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaa |
44356172 |
T |
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| Q |
510 |
aaaattctgcagcagctgatgttcatgtagcgctaaaaaatactacagcagctgatgtttctgatgtcaaaa |
581 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
44356171 |
aaaattctgcagcagctgatgttcatgtagtgctaaaaaatactacatcagctgatgtttctgatgtcaaaa |
44356100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 461 - 581
Target Start/End: Complemental strand, 44356070 - 44355950
Alignment:
| Q |
461 |
gcagcaactgatatttctgttagtaaatttttggaacctgaagcgccaaaaaattctgcagcagctgatgttcatgtagcgctaaaaaatactacagcag |
560 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| | ||| ||||||| ||| ||||||||| ||||||||||| |||||||||||| |||||| |
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| T |
44356070 |
gcagcagctgatgtttctgttagtaaatttttggaacctgtaacgctaaaaaatactggagcagctgaggttcatgtagcactaaaaaatactgcagcag |
44355971 |
T |
|
| Q |
561 |
ctgatgtttctgatgtcaaaa |
581 |
Q |
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|||||||||||| | |||||| |
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| T |
44355970 |
ctgatgtttctgttatcaaaa |
44355950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 13059703 - 13059759
Alignment:
| Q |
152 |
ttaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggagg |
208 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||| |
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|
| T |
13059703 |
ttaaattggtggaggaatgggggtgcaatttgggggaggatgtgtttatgacggagg |
13059759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 242
Target Start/End: Complemental strand, 21110759 - 21110669
Alignment:
| Q |
152 |
ttaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggaggaggtgaatgatgatagaccggaaacgttattgca |
242 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||| | |||||| |
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| T |
21110759 |
ttaagttggtggaggagtggggttgtaatttgggggaggatgctttcatgacggaggaggtgatcgattctagaccggaaacatgattgca |
21110669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 2890799 - 2890857
Alignment:
| Q |
149 |
ttattaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggag |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
2890799 |
ttattaagctggtggaggaatggggatgcaacttgggggaggatgcctttatgacggag |
2890857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 14972572 - 14972632
Alignment:
| Q |
149 |
ttattaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggagga |
209 |
Q |
| |
|
|||| |||||||||||||| ||||| ||| ||||||||||||||| ||| ||| |||||| |
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|
| T |
14972572 |
ttatcaagttggtggaggagtgggggtgtaatttgggggaggatgcctttttgagggagga |
14972632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 14554246 - 14554186
Alignment:
| Q |
151 |
attaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggaggagg |
211 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| ||||| ||||||||| |||||||||||| |
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|
| T |
14554246 |
attaaattggtggagaaatggggatgtcatttaggggatgatgcttttttgacggaggagg |
14554186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 52348592 - 52348541
Alignment:
| Q |
147 |
ttttattaagttggtggaggaatggggatgttgtttgggggaggatgctttt |
198 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||| || ||||||||| |
|
|
| T |
52348592 |
ttttattaagttggtggaggaacggggatgtaatttgggagaagatgctttt |
52348541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 75206 - 75148
Alignment:
| Q |
156 |
gttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggaggaggtga |
214 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
75206 |
gttggtggaggagtggggatgcaacttgggtgaggatgcatttatgacggaggaggtga |
75148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 45721416 - 45721356
Alignment:
| Q |
149 |
ttattaagttggtggaggaatggggatgttgtttgggggaggatgcttttatgacggagga |
209 |
Q |
| |
|
|||| |||||||||||||| ||||| ||| ||||||||||||||| ||| ||| |||||| |
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|
| T |
45721416 |
ttatcaagttggtggaggagtgggggtgtaatttgggggaggatgcctttttgaaggagga |
45721356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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