View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9025_low_4 (Length: 534)
Name: NF9025_low_4
Description: NF9025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9025_low_4 |
 | |
|
| [»] scaffold0190 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 8102641 - 8102129
Alignment:
| Q |
18 |
gtaaatgtgcttggaagatgcacgaaacgatttctttgcactcaaatgagaagttgaagaatgactatgagaattgggtgagaaatccaatcatctatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102641 |
gtaaatgtgcttggaagatgcacgaaacgatttgtttgcactcaaatgagaagttgaagaatgactatgagaattgggtgagaaatccaatcatctatag |
8102542 |
T |
|
| Q |
118 |
acttggtgatagtaacgttgccgattatcatgtgatggctagtagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102541 |
acttggtgatagtaacgttgccgattatcatgtgttggctagtagcagttcccagtggtttgatgtttatggcaataattttggatggggaaaaccagtg |
8102442 |
T |
|
| Q |
218 |
gcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102441 |
gcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattt |
8102342 |
T |
|
| Q |
318 |
tggaggcaatgggaaatgatcctgttttcatggactttgtatccaattaacgtgggtttaaaatttgcaaaattggtttggtactattttagttcatatt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102341 |
tggaggcaatgggaaatgatcctgttttcatgaactttgtatccaattaacgtgggtttaaaatttgcaaaattggtttggtactattttagttcatatt |
8102242 |
T |
|
| Q |
418 |
cttgaatttgtgtgttgtaatccgtagtaaattaacgatgttctagtctttcttttgttaaattaaacttttttgggggaaaacgctattgattttgttg |
517 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
8102241 |
cttgaatttgtgtgttgtaatccataataaattaacgatgttctagtctttcttttgttaaataaaacttttttcggggaaaacgctattgattatgttg |
8102142 |
T |
|
| Q |
518 |
ctgatgtccatct |
530 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
8102141 |
cttatgtacatct |
8102129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 158 - 401
Target Start/End: Original strand, 40147438 - 40147681
Alignment:
| Q |
158 |
agtagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctg |
257 |
Q |
| |
|
||||||| ||||| | |||||||||||||||| ||| |||||||||||||| |||| |||||||||||||||||||||||| ||||||| || || ||| |
|
|
| T |
40147438 |
agtagcaattccccgtggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactg |
40147537 |
T |
|
| Q |
258 |
tatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatggactttgt |
357 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||| | || |||||||| |||| |
|
|
| T |
40147538 |
tatttgctggaaaagaagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgt |
40147637 |
T |
|
| Q |
358 |
atccaattaacgtgggtttaaaatttgcaaaattggtttggtac |
401 |
Q |
| |
|
|| ||||| ||| |||||| |||||||||| ||||||||| |
|
|
| T |
40147638 |
gtctaattagtgtgagtttaaggtttgcaaaatcagtttggtac |
40147681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 175 - 351
Target Start/End: Original strand, 7656227 - 7656403
Alignment:
| Q |
175 |
gtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaa |
274 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| || ||||||||||| |||||||||||| || |||| || || || ||||||||||||||| |
|
|
| T |
7656227 |
gtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaa |
7656326 |
T |
|
| Q |
275 |
gaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatgga |
351 |
Q |
| |
|
|||| ||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7656327 |
gaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatgga |
7656403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 7606266 - 7606108
Alignment:
| Q |
174 |
ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga |
273 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||| | |||||||| |||||| ||||| || |||| | | |||||||||||||||||| |
|
|
| T |
7606266 |
ggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaataga |
7606167 |
T |
|
| Q |
274 |
agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
7606166 |
agaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa |
7606108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 174 - 336
Target Start/End: Complemental strand, 7637094 - 7636932
Alignment:
| Q |
174 |
ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga |
273 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| || |||||||||| |||||| ||||| || |||||| || | |||||||| |||||||| |
|
|
| T |
7637094 |
ggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaataga |
7636995 |
T |
|
| Q |
274 |
agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
336 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7636994 |
agaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga |
7636932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 160 - 336
Target Start/End: Complemental strand, 7615294 - 7615118
Alignment:
| Q |
160 |
tagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta |
259 |
Q |
| |
|
||||||||| | | |||||||||||||||| ||| ||||||| |||||||| || ||||||||||| |||||| ||||| || |||||| || | || |
|
|
| T |
7615294 |
tagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtt |
7615195 |
T |
|
| Q |
260 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
336 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||||| | || ||||||||||||||||||||||||| |
|
|
| T |
7615194 |
tttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga |
7615118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 256 - 336
Target Start/End: Complemental strand, 7628636 - 7628556
Alignment:
| Q |
256 |
tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | ||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
7628636 |
tgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga |
7628556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 39071002 - 39070932
Alignment:
| Q |
161 |
agcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtgg |
231 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||| ||||| |
|
|
| T |
39071002 |
agcagttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgg |
39070932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 160 - 336
Target Start/End: Original strand, 8936167 - 8936343
Alignment:
| Q |
160 |
tagcagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgta |
259 |
Q |
| |
|
||||||||| | | |||||||||||||||| ||| |||||||||||||||| || || |||| ||| ||||| ||||| || |||||| || | ||| |
|
|
| T |
8936167 |
tagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttattacagta |
8936266 |
T |
|
| Q |
260 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
336 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
8936267 |
tttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatga |
8936343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 174 - 332
Target Start/End: Original strand, 8941826 - 8941983
Alignment:
| Q |
174 |
ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaataga |
273 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||| | ||||| || |||||| ||||| || |||| | | |||||||||||||||||| |
|
|
| T |
8941826 |
ggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaataga |
8941924 |
T |
|
| Q |
274 |
agaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
332 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
8941925 |
agaaggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaa |
8941983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 201 - 336
Target Start/End: Original strand, 8913705 - 8913840
Alignment:
| Q |
201 |
gatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatg |
300 |
Q |
| |
|
|||||||||| || ||||||||||| |||||| ||||| || |||||| || | ||||||| |||||||||||||||| ||| ||||||||||| || |
|
|
| T |
8913705 |
gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttg |
8913804 |
T |
|
| Q |
301 |
tcttcctcacaagattttggaggcaatgggaaatga |
336 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |
|
|
| T |
8913805 |
tcttcctcgtgagattttggagggaatgggaaatga |
8913840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 163 - 328
Target Start/End: Complemental strand, 6500540 - 6500375
Alignment:
| Q |
163 |
cagttcccagaggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtattt |
262 |
Q |
| |
|
|||||||| | |||||||| ||||||| ||| ||||||||||||| ||||| |||||| ||||||||| ||||||| | ||| || || ||||||| |
|
|
| T |
6500540 |
cagttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtattt |
6500441 |
T |
|
| Q |
263 |
gctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatg |
328 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||| ||||||||| |||||| |||||| |||||| |
|
|
| T |
6500440 |
gctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatg |
6500375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 11968861 - 11968792
Alignment:
| Q |
270 |
tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcc |
339 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
11968861 |
tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggccatgaaaaatgatcc |
11968792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 15196335 - 15196416
Alignment:
| Q |
260 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg |
341 |
Q |
| |
|
|||||||| | ||||||||| ||||||||| || |||| |||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
15196335 |
tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctg |
15196416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 15745030 - 15745074
Alignment:
| Q |
174 |
ggtttgatgtttatggcaataattttggatggggaaaaccagtgg |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
15745030 |
ggtttgatgtttatggcaatgattttggttggggaaaacctgtgg |
15745074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 341
Target Start/End: Complemental strand, 4390 - 4319
Alignment:
| Q |
270 |
tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg |
341 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
4390 |
tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctg |
4319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 4492 - 4435
Alignment:
| Q |
174 |
ggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtgg |
231 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
4492 |
ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgg |
4435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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