View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9025_low_5 (Length: 495)
Name: NF9025_low_5
Description: NF9025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9025_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 3566164 - 3565700
Alignment:
| Q |
17 |
gtatctgcatctttattttccacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgtgtaatct |
116 |
Q |
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| T |
3566164 |
gtatctgcatctttattttccacaatgttggcccatgagtttttaagaaagtctatatccttctggactatgtcaggagtggacaaaggttgtgtaatct |
3566065 |
T |
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| Q |
117 |
acttttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccctacgtgctagtatcatcttgcgcattcacatctaagtctccaac |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3566064 |
gctcttcatcctcatcttcttcattatggtcttgtgttgcatcgacaaaggaaccttacgtgctagtatcatcttgcgcattcacatctaagtctccaac |
3565965 |
T |
|
| Q |
217 |
ataattaacttgaatgttggcctttatttccacttctatttgcaaatcttgggcctttaacagttcagcaggtgaagtgtttttgtcaggagtcttcaca |
316 |
Q |
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| T |
3565964 |
agaattaacttgaatgttggcatttatttccacttctatttgcaaatcttgggcctttaagagttcagcaggtgaagtgtttttgtcaggagtcttcaca |
3565865 |
T |
|
| Q |
317 |
ttagactgcacctcctcttgttccttatcattcttatcatttccaggtaattcctcaacattgataacttctttctcaacattgattacttccttacctt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3565864 |
ttagactgcacctcctcttgttccttatcattcttatcatttccagccaattcctcaacattgataacttctttctcgacattgattacttccttacctt |
3565765 |
T |
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| Q |
417 |
tacccaatattctttgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatg |
481 |
Q |
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||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565764 |
tactcagtattctctgttctgatctcttcttcagggtgccatcttttgcaataatcaacatgatg |
3565700 |
T |
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