View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9025_low_8 (Length: 419)
Name: NF9025_low_8
Description: NF9025
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9025_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 362
Target Start/End: Original strand, 41446571 - 41446926
Alignment:
| Q |
7 |
gaagcagagacaccttaaggataagtgtccgatagttgtatgatatatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttt |
106 |
Q |
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| T |
41446571 |
gaagcacagacaccttaaggataagtgtccgatagttgtatgatatatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttt |
41446670 |
T |
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| Q |
107 |
tcttcgttttcacactttccttcaatcagtgtgtctgaaacatgtatgacacacgtaagacacgtgttgatcaaactaaaacaagtatccnnnnnnntta |
206 |
Q |
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| T |
41446671 |
tcttcgttttcacactttccttcaatcagtgtgtctgaaacatatatgacagacgtacgacacgtgttgatcaaactaaaacaagtatccaaaaaaatta |
41446770 |
T |
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| Q |
207 |
ttttaacaaaccttacactctcattggacacatctacaacatgttgttgaggtaataaaagttgagtacaataactttagcctttgttttagcctttgta |
306 |
Q |
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| T |
41446771 |
tttcaacaaaccttacactctcattggacacatctacaacatgttgttgaggtaataaaagttgagtacaataactttagcctttgatttagcctttgta |
41446870 |
T |
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| Q |
307 |
atagtagatgtaaatggataaataaaagtcaaatactatgttattatatttttctc |
362 |
Q |
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| T |
41446871 |
atagtagatgtaaatggataaataaaagtcaaatactatgttattatatttttctc |
41446926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 41455418 - 41455532
Alignment:
| Q |
51 |
atatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatg |
150 |
Q |
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| T |
41455418 |
atatgtacgacatgtgttagaaatctgagacaagcgtcctaacaaaatttgttttttcttccttttcacac--tccttcaatca--gtgtcagaaacata |
41455513 |
T |
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| Q |
151 |
tatgacacacgtaagacac |
169 |
Q |
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| T |
41455514 |
catgacacacgtacgacac |
41455532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 41446968 - 41447010
Alignment:
| Q |
377 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatcc |
419 |
Q |
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| T |
41446968 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatcc |
41447010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 41457150 - 41457191
Alignment:
| Q |
377 |
ctacatagtcatcaagaaccagagagcatgcaacatagcatc |
418 |
Q |
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| T |
41457150 |
ctacatagtcatcaagaaccagagagcacgcaacatagcatc |
41457191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 41456923 - 41457007
Alignment:
| Q |
167 |
cacgtgttgatcaaactaaaacaagtatccnnnnnnnttattttaacaaaccttacactctcattggacacatctacaacatgtt |
251 |
Q |
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| T |
41456923 |
cacgtgtcggtcaaactaagacaagtatccgaaagacttatctttacaaaccttacactcgccttggacacatctacaacatgtt |
41457007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 16419437 - 16419303
Alignment:
| Q |
51 |
atatgtacgacttgtattaaaaatttgagtcaagtgttccaacaaaatttgttttttcttcgttttcacactttccttcaatcagtgtgtctgaaacatg |
150 |
Q |
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||||||||||| ||| ||| ||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| ||| ||| |
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| T |
16419437 |
atatgtacgacatgtgttagaaatttgagacaagtgtcccaacgaaatttgttttttcttccttttcgcac--tccttcaatcaatgt---------atg |
16419349 |
T |
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| Q |
151 |
tatgacacacgtaagacacgtgttgatcaaactaaaacaagtatcc |
196 |
Q |
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|||||||||||| ||||||||| | ||||||||| |||||||||| |
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| T |
16419348 |
catgacacacgtacgacacgtgtcggtcaaactaagacaagtatcc |
16419303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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