View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_high_10 (Length: 461)
Name: NF9026_high_10
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_10 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 39747272 - 39747735
Alignment:
| Q |
1 |
tcattcaaaatcatgacataagttaaagaaataaagtgatgagcatagatgactccttgaaagatctaattactacaaaaatagtgtagcaggtctgagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |
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| T |
39747272 |
tcattcaaaatcatgacataagttaaagaaataaagtgatgagcatagatgactccttgaaaaatctaattactacaaa--tagtgcagcaggtctgagt |
39747369 |
T |
|
| Q |
101 |
ttctggtggtgaaa----tcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttct |
196 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39747370 |
ttctggtggtgaaaagaatcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaaattcttct |
39747469 |
T |
|
| Q |
197 |
ggaattgtaaagtctggatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtccc |
296 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39747470 |
ggaattgaaaagtctggatcatcaaggcaatttacatcatcaggtaaatcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtccc |
39747569 |
T |
|
| Q |
297 |
aagacggctgctttgctttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatattaaca |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39747570 |
aagacggctgctttgctttttgtatgttgttaaattggttgcttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatgttaaca |
39747669 |
T |
|
| Q |
397 |
accgattcgctattagtttattttattttttataatcaaaagttctgatat-aaaaattatatatt |
461 |
Q |
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| T |
39747670 |
accgattcgctattagtttattttattttttataatcaaaagttctggtataaaaaattatatatt |
39747735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 143 - 411
Target Start/End: Complemental strand, 27021909 - 27021643
Alignment:
| Q |
143 |
ttataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatcatcaaggcaattcacatcatcaggta |
242 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
27021909 |
ttataactttttgt---tgtggaggttgtgatagaattctctgcaacttcttctggaattacgaagtccggatcatcaaggcaatttacatcatcaggta |
27021813 |
T |
|
| Q |
243 |
attcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgctttttgtatgttgttaaattggttacttag |
342 |
Q |
| |
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| || ||||||| |||||||||||||||||||| |||| |||| | || ||||||| | || ||| |||||| ||| |||| | | ||| || |
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| T |
27021812 |
aatcggtatctacccattgagaccaatccacatagtcagtagtatcgaattcccaagttgactccttcaatttttgcatgctgtttatcttattaaccag |
27021713 |
T |
|
| Q |
343 |
tgttagtagcatttgatggttcaacctttcaaagtccctgcataaat-attaacaaccgattcgctatta |
411 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| ||||||||||||| | |||||||||| |||| |||||| |
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| T |
27021712 |
tgttaggagcatttgatggttcaatctttcatagtccctgcataattaattaacaaccaattctctatta |
27021643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 112 - 286
Target Start/End: Original strand, 27086438 - 27086609
Alignment:
| Q |
112 |
aaatcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtct |
211 |
Q |
| |
|
|||||||||| |||||||||| | ||| | |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
27086438 |
aaatcaatgtaaacgattgcgtgagcgcaagttataactttttgt---tgtggaggttgtgattgaattctctgcaacttcttctggaatcacaaagtcc |
27086534 |
T |
|
| Q |
212 |
ggatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagta |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||| |||| |
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| T |
27086535 |
ggatcatcaaggcaattcacatcatcaggtatatcaatatctatcaattgagaccaatccacataatcagtagta |
27086609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 112 - 385
Target Start/End: Complemental strand, 26980257 - 26979987
Alignment:
| Q |
112 |
aaatcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtct |
211 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||||| |||||| |
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| T |
26980257 |
aaatcaatgtaaacgattgcgtgagcgtaagttataattttttgt---tgtggagtttgtgattgaattctctgcaacttcttctggaatcacaaagtcc |
26980161 |
T |
|
| Q |
212 |
ggatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttg |
311 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||| ||||| | |||||||||||||||| ||||| |||| | || |||||| | | ||| |
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| T |
26980160 |
ggatcatcaaggcaattgacatcatcaggtaaatcagtacctatcaactgagaccaatccacataatcagtagtatcgaaatcccaatttgaatccttca |
26980061 |
T |
|
| Q |
312 |
ctttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat |
385 |
Q |
| |
|
||||| |||||||| | | ||| |||||||||| |||||||||||||||||||||||| | ||||||||| |
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| T |
26980060 |
atttttccatgttgtttatcttattaattagtgttaggagcatttgatggttcaacctttcataatccctgcat |
26979987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 422
Target Start/End: Original strand, 1959328 - 1959739
Alignment:
| Q |
3 |
attcaaaatcatgacataagttaaagaaataaagtgatgagcatagatgactccttgaaagatctaattactacaaaaatagtgtagcaggtctgagttt |
102 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
1959328 |
attcaaaatcatgacataagtgaaagaaataaagtgatgtgcatagatgc-----------atctaattactacacaaatagtgtagcaggtgtgagttt |
1959416 |
T |
|
| Q |
103 |
ctggtggtgaaa----tcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctgg |
198 |
Q |
| |
|
||||| ||||| ||||||| ||| |||||||| |||| ||||||| |||| ||| ||| ||||||||| ||||||||||||||||||||| ||| |
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| T |
1959417 |
gtggtgatgaaaagaatcaatgttaacaattgcgcgaacgtaaattataagtttt-gtaattgctgaggttgtggtcgaattctctgcaacttcttatgg |
1959515 |
T |
|
| Q |
199 |
aattgtaaagtctggatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagca---gtagcaaagtcc |
295 |
Q |
| |
|
|||||| ||| | |||||||| | |||||||||||||||| ||| ||| ||| |||||||||||| ||||||||||||||| || |||| ||| || |
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|
| T |
1959516 |
tattgtatagtttagatcatcatgacaattcacatcatcag-taaatcaatatatatccattgagaacaatccacatcatcatcaacagtagaaaaatct |
1959614 |
T |
|
| Q |
296 |
caagacggctgctttgctttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcataaatattaac |
395 |
Q |
| |
|
||||| | ||| |||||||||||||| |||||| |||||||| |||||||||||| ||||||||| ||||||||||| ||||| || | ||||||||| |
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| T |
1959615 |
caagatgactgatttgctttttgtattttgttagattggttagttagtgttagtaacatttgatg-ttcaacctttcgaagtct-tgtgtgaatattaac |
1959712 |
T |
|
| Q |
396 |
aaccgattcgctattagtttattttat |
422 |
Q |
| |
|
||| |||| ||||| |||||||||| |
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|
| T |
1959713 |
aactaattcactatttatttattttat |
1959739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 112 - 385
Target Start/End: Complemental strand, 34682655 - 34682385
Alignment:
| Q |
112 |
aaatcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtct |
211 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||||| ||||||| ||| ||| ||||||| |||||||||||||||||||||||||| |||||| |
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| T |
34682655 |
aaatcaatgtaaacgattgcgtgagcgtaagttataattttttgt---tgtggagattgtgattgaattctctgcaacttcttctggaatcacaaagtcc |
34682559 |
T |
|
| Q |
212 |
ggatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttg |
311 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||||| | |||||||||||||||| ||||| |||| | || |||||| | | ||| |
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| T |
34682558 |
ggatcatcaaggcaattgacatcatcaggtaaatcagtacctatcaactgagaccaatccacataatcagtagtatcgaaatcccaatttgaatccttca |
34682459 |
T |
|
| Q |
312 |
ctttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat |
385 |
Q |
| |
|
||||| |||||||| | | ||| ||||||||| |||||||||||||||||||||||| | ||||||||| |
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|
| T |
34682458 |
atttttccatgttgtttatcttattaagtagtgttaggagcatttgatggttcaacctttcataatccctgcat |
34682385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 113 - 385
Target Start/End: Complemental strand, 11633689 - 11633420
Alignment:
| Q |
113 |
aatcaatgtcaacgattgcgcgggcgtagattataactttttgtagttgtagaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctg |
212 |
Q |
| |
|
|||||| || |||||||||| | ||| ||||||||| |||||| | ||||| ||||||| |||||||||||||||||||| |||| | |||||| | |
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|
| T |
11633689 |
aatcaacgtaaacgattgcgtgagcgcagattataattttttga---tatagagcttgtgattgaattctctgcaacttcttcaggaactacaaagtccg |
11633593 |
T |
|
| Q |
213 |
gatcatcaaggcaattcacatcatcaggtaattcagtatctatccattgagaccaatccacatcatcagcagtagcaaagtcccaagacggctgctttgc |
312 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||| | | || ||||||||||||||| ||||| || || ||||||||| | || ||| |
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|
| T |
11633592 |
gatcatcaagacagttcacatcatcaggtaaatcagtatcaagcaatcgagaccaatccacataatcagttgtttcagagtcccaagttgtctccttcaa |
11633493 |
T |
|
| Q |
313 |
tttttgtatgttgttaaattggttacttagtgttagtagcatttgatggttcaacctttcaaagtccctgcat |
385 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11633492 |
tttttgaatgttgttaatctcattaactagtgttaggagcatatgatggttcaacctttcatagtccctgcat |
11633420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 33638855 - 33638781
Alignment:
| Q |
164 |
gaggttgtgatcgaattctctgcaacttcttctggaattgtaaagtctggatcatcaaggcaattcacatcatca |
238 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
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| T |
33638855 |
gaggttatgattgaattctctgcaacttcttctggaatcacaaagtccggatcatcaaggcaattcacattatca |
33638781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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