View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_high_17 (Length: 369)
Name: NF9026_high_17
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 32805373 - 32805023
Alignment:
| Q |
1 |
cagattagacaccattcttttcccaatgccatattattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgtt |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
32805373 |
cagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctatgtagttatt |
32805274 |
T |
|
| Q |
101 |
gaacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccactgagacctcctcccggaatgttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32805273 |
gaacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattctgcaacagtagcatcaccactgagacctcctcccggattgttg |
32805174 |
T |
|
| Q |
201 |
agaagaaaaccattggaacaagggatccacctatctttgaagatgcagacaagactcccatcccctatttcccatcttgcaccagtttcaataacccctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32805173 |
agaagaaaaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcaccagtttcaataacctctt |
32805074 |
T |
|
| Q |
301 |
ttgcagacaacagacttctccaagcatagctgggttgaaatccaatctttg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32805073 |
ttgcagacaacagacttctccaagcatagctgggttgaaatccaatctttg |
32805023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 6095544 - 6095894
Alignment:
| Q |
1 |
cagattagacaccattcttttcccaatgccatattattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6095544 |
cagagtagacaccattcttttcccaatgccatatgattttgtctgttggacgcctaacagataaagggatgcttatgattttcctggctgtgtagttgtt |
6095643 |
T |
|
| Q |
101 |
gaacctgctaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaacagtagcatcaccactgagacctcctcccggaatgttg |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
6095644 |
gaacctactaaaaataagaccccggtcccactgatttgtatccctatcaattaattccgcaatagtagcatcaccactaagacctcctcccggattgttg |
6095743 |
T |
|
| Q |
201 |
agaagaaaaccattggaacaagggatccacctatctttgaagatgcagacaagactcccatcccctatttcccatcttgcaccagtttcaataacccctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6095744 |
agaagaaaaccattggaacaagggatccacctatctttgaagatgcggacaagactcccatcccctatttcccatcttgcactagtttcaataacccctt |
6095843 |
T |
|
| Q |
301 |
ttgcagacaacagacttctccaagcatagctgggttgaaatccaatctttg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6095844 |
ttgcagacaacagacttctccaagcatagctgggttgaaatccaatctttg |
6095894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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