View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_high_18 (Length: 357)

Name: NF9026_high_18
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_high_18
NF9026_high_18
[»] chr2 (19 HSPs)
chr2 (28-353)||(33635648-33635976)
chr2 (184-289)||(25749690-25749795)
chr2 (184-310)||(45716436-45716562)
chr2 (185-298)||(7820037-7820150)
chr2 (184-313)||(29108715-29108844)
chr2 (223-301)||(32143621-32143699)
chr2 (184-301)||(8329659-8329776)
chr2 (243-319)||(35470309-35470385)
chr2 (190-319)||(6599338-6599467)
chr2 (231-319)||(29740694-29740782)
chr2 (205-298)||(15988843-15988936)
chr2 (223-312)||(19511124-19511212)
chr2 (243-313)||(36100998-36101064)
chr2 (233-301)||(9620621-9620689)
chr2 (232-279)||(45134472-45134519)
chr2 (231-301)||(28580411-28580481)
chr2 (243-281)||(45326726-45326764)
chr2 (243-319)||(15658790-15658866)
chr2 (255-299)||(42753448-42753492)
[»] chr3 (24 HSPs)
chr3 (185-317)||(38832948-38833082)
chr3 (190-301)||(40892802-40892913)
chr3 (185-319)||(53653104-53653237)
chr3 (185-284)||(51459781-51459881)
chr3 (198-285)||(29793450-29793537)
chr3 (234-301)||(51490200-51490267)
chr3 (242-316)||(32497828-32497902)
chr3 (182-301)||(36754737-36754856)
chr3 (243-301)||(23086450-23086508)
chr3 (243-301)||(23089297-23089355)
chr3 (240-301)||(9099170-9099231)
chr3 (190-275)||(52762988-52763073)
chr3 (242-314)||(31977262-31977334)
chr3 (190-314)||(50662423-50662547)
chr3 (248-295)||(37677367-37677414)
chr3 (251-301)||(28233469-28233519)
chr3 (232-301)||(27659744-27659813)
chr3 (257-301)||(6876246-6876290)
chr3 (223-290)||(46476477-46476545)
chr3 (196-303)||(34664269-34664376)
chr3 (184-275)||(39149167-39149258)
chr3 (258-317)||(49980306-49980365)
chr3 (242-280)||(4275510-4275548)
chr3 (243-301)||(55142341-55142399)
[»] chr6 (16 HSPs)
chr6 (184-301)||(31330528-31330645)
chr6 (237-327)||(21608196-21608286)
chr6 (190-298)||(9245936-9246044)
chr6 (205-289)||(11393685-11393769)
chr6 (184-259)||(2667396-2667471)
chr6 (259-314)||(2667080-2667135)
chr6 (190-313)||(29608446-29608569)
chr6 (190-300)||(30533657-30533768)
chr6 (259-313)||(2656426-2656480)
chr6 (232-313)||(31955650-31955731)
chr6 (182-313)||(12109264-12109394)
chr6 (231-301)||(2158098-2158168)
chr6 (232-302)||(646583-646655)
chr6 (244-313)||(8052205-8052274)
chr6 (182-301)||(3882580-3882699)
chr6 (251-299)||(6030953-6031001)
[»] chr4 (24 HSPs)
chr4 (183-300)||(36619866-36619983)
chr4 (232-310)||(32056298-32056376)
chr4 (184-310)||(47742730-47742856)
chr4 (184-301)||(1955298-1955416)
chr4 (184-315)||(36860288-36860417)
chr4 (183-302)||(21139254-21139373)
chr4 (231-312)||(12763412-12763493)
chr4 (196-301)||(49081254-49081358)
chr4 (240-298)||(53374989-53375047)
chr4 (227-319)||(26194529-26194621)
chr4 (242-301)||(33033241-33033300)
chr4 (190-313)||(48743461-48743584)
chr4 (240-314)||(47089206-47089280)
chr4 (184-301)||(34015732-34015849)
chr4 (242-314)||(1051783-1051855)
chr4 (242-312)||(7633179-7633249)
chr4 (196-310)||(42274287-42274401)
chr4 (232-281)||(41454948-41454997)
chr4 (240-301)||(42915749-42915810)
chr4 (242-310)||(12069391-12069459)
chr4 (255-319)||(38609087-38609151)
chr4 (256-318)||(20922683-20922745)
chr4 (191-275)||(37858387-37858472)
chr4 (223-277)||(45418872-45418922)
[»] chr1 (18 HSPs)
chr1 (190-298)||(14171826-14171934)
chr1 (184-301)||(963962-964079)
chr1 (184-284)||(26127286-26127386)
chr1 (193-298)||(35285484-35285589)
chr1 (182-308)||(49065938-49066063)
chr1 (242-310)||(43638388-43638456)
chr1 (223-313)||(35538951-35539041)
chr1 (231-332)||(38680364-38680465)
chr1 (243-310)||(6395464-6395531)
chr1 (243-289)||(1411593-1411639)
chr1 (242-290)||(15822686-15822734)
chr1 (232-288)||(31820733-31820789)
chr1 (242-297)||(19998585-19998640)
chr1 (182-269)||(47473835-47473921)
chr1 (232-298)||(4612450-4612516)
chr1 (255-301)||(42887981-42888027)
chr1 (231-303)||(26537488-26537561)
chr1 (247-315)||(46598214-46598282)
[»] scaffold0007 (1 HSPs)
scaffold0007 (190-313)||(185442-185565)
[»] chr8 (20 HSPs)
chr8 (182-312)||(13015361-13015491)
chr8 (196-298)||(33986869-33986971)
chr8 (201-294)||(41013260-41013353)
chr8 (190-319)||(34127649-34127779)
chr8 (185-319)||(42563182-42563316)
chr8 (240-301)||(16938906-16938967)
chr8 (240-301)||(27924490-27924551)
chr8 (182-298)||(37940455-37940571)
chr8 (223-298)||(18087221-18087296)
chr8 (245-302)||(468131-468188)
chr8 (242-319)||(44362280-44362357)
chr8 (190-310)||(44801470-44801590)
chr8 (190-301)||(24184528-24184638)
chr8 (190-301)||(8457495-8457606)
chr8 (242-312)||(7662304-7662374)
chr8 (244-289)||(4366318-4366363)
chr8 (248-296)||(30157746-30157794)
chr8 (255-301)||(26491462-26491508)
chr8 (244-314)||(41646427-41646497)
chr8 (255-316)||(40891891-40891952)
[»] chr7 (13 HSPs)
chr7 (190-314)||(6221041-6221164)
chr7 (184-313)||(9047092-9047220)
chr7 (184-317)||(30898035-30898168)
chr7 (193-314)||(45879108-45879229)
chr7 (201-301)||(22342314-22342414)
chr7 (242-301)||(40417683-40417742)
chr7 (240-301)||(34224314-34224375)
chr7 (242-313)||(8919380-8919451)
chr7 (266-301)||(24495335-24495370)
chr7 (242-313)||(25790121-25790192)
chr7 (243-289)||(6975144-6975190)
chr7 (248-301)||(30198327-30198380)
chr7 (190-262)||(28359734-28359806)
[»] chr5 (23 HSPs)
chr5 (182-293)||(932131-932241)
chr5 (190-301)||(32310929-32311040)
chr5 (194-298)||(8590126-8590230)
chr5 (241-301)||(19366802-19366862)
chr5 (255-319)||(26296444-26296508)
chr5 (255-314)||(24181448-24181507)
chr5 (255-301)||(5471543-5471589)
chr5 (240-301)||(36301228-36301289)
chr5 (232-301)||(41868817-41868886)
chr5 (199-275)||(26440118-26440194)
chr5 (199-301)||(14148276-14148376)
chr5 (242-313)||(19336829-19336899)
chr5 (240-333)||(24196398-24196492)
chr5 (205-270)||(26295525-26295590)
chr5 (240-301)||(33382297-33382358)
chr5 (231-315)||(33054102-33054186)
chr5 (243-314)||(9922948-9923019)
chr5 (241-271)||(5024924-5024954)
chr5 (251-301)||(5412005-5412055)
chr5 (187-301)||(7313198-7313312)
chr5 (255-313)||(8955235-8955293)
chr5 (183-217)||(24804388-24804422)
chr5 (190-319)||(5091774-5091903)
[»] scaffold0191 (1 HSPs)
scaffold0191 (182-319)||(4532-4669)
[»] scaffold0275 (1 HSPs)
scaffold0275 (243-313)||(371-441)
[»] scaffold0009 (1 HSPs)
scaffold0009 (182-301)||(140246-140365)
[»] scaffold0257 (1 HSPs)
scaffold0257 (242-288)||(18845-18891)
[»] scaffold0603 (1 HSPs)
scaffold0603 (243-296)||(7096-7149)
[»] scaffold1095 (1 HSPs)
scaffold1095 (243-301)||(918-976)
[»] scaffold0735 (1 HSPs)
scaffold0735 (255-301)||(934-980)


Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 353
Target Start/End: Complemental strand, 33635976 - 33635648
Alignment:
Q  28 cccaaaccttgatgattagcgaatgaacccgataactaacacgggaatagatccccagactaacaatgacgacatccagagacgaacccaaaaatttatt 127  Q
    ||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  33635976 cccaaactttgatgattagcgaatgaacccgataactaataggggaatagatccccagactaacaatgac---atccagagacgaacccaaaaatttatt 33635880  T
Q  128 gtagtgtacgcaatacatctaagatataattaaatgggtcttgtt-----gtgccc-tccgacactaattaaggaactaaaaatagaaagaaaagtaatg 221  Q
    | ||||||||||||||||||| ||||||||||||||| |||||||     |||||| |   || ||| |||||||||||||||||||||||||||| | |    
T  33635879 gcagtgtacgcaatacatctaggatataattaaatggatcttgttaaccagtgcccctgaaaccctagttaaggaactaaaaatagaaagaaaagtcaag 33635780  T
Q  222 gtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccggtt 321  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33635779 ttttatatcgaaaagaatacttttttaacttttaaaaagtagaatacacaatttccaagacaatattttcttttataatttcctaaccagtgctccggtt 33635680  T
Q  322 aacatttccctaattaaatatagggtcttgct 353  Q
    ||||||||||||||||||||||||||||||||    
T  33635679 aacatttccctaattaaatatagggtcttgct 33635648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 289
Target Start/End: Complemental strand, 25749795 - 25749690
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| ||||||||||| || ||||||||||||||| | ||| ||| |||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |    
T  25749795 cactagttaaggaactacaagtagaaagaaaagtaaagttttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaatttccaagaaa 25749696  T
Q  284 atattt 289  Q
    ||||||    
T  25749695 atattt 25749690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 45716436 - 45716562
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||| ||||||||||||| |   |||  || ||||| || |||||||||||||| |||||||||||| || ||||| |||||||    
T  45716436 cactagttaaggaactaaaagtagaaagaaaagtcaaattttgtattgaaaataacacttttttaactttcaaaaagtagaatccataatttccaagaca 45716535  T
Q  284 atattttcttttataatttcctaacca 310  Q
    |||||| ||||||||||| | ||||||    
T  45716536 atatttccttttataattccttaacca 45716562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 7820150 - 7820037
Alignment:
Q  185 actaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaa 284  Q
    |||| |||||||||||||| ||||||||||| | |   ||| ||| ||| | |||| |||||||||||| ||||||||||||| |||||||  |||||||    
T  7820150 actagttaaggaactaaaagtagaaagaaaaattaatttttgcattgaacataatatttttttaactttcaaaaagtagaatatacaatttcgaagacaa 7820051  T
Q  285 tattttcttttata 298  Q
    ||||| ||||||||    
T  7820050 tatttccttttata 7820037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 29108715 - 29108844
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| ||||| |||||||| |||||| |||||  ||  |||  || |||||||  | |||||||||||||||||| |  |||||||||||||||||| |    
T  29108715 cactagttaagaaactaaaagtagaaacaaaagctataatttgtattgaaaagagcaattttttaacttttaaaaaatgaaatacacaattttcaagaaa 29108814  T
Q  284 atattttcttttataatttcctaaccagtg 313  Q
    |||||| ||||||||||| | |||||||||    
T  29108815 atatttccttttataattccttaaccagtg 29108844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 32143699 - 32143621
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||| ||||| || | | ||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  32143699 tttacattgaaaataacaatatttcaacttttaaaaaatagaatacacaattttcaagaaaatattttcttttctaatt 32143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 8329776 - 8329659
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||| ||||||||||| | | | ||| |||  ||||||| ||  |||||||||| ||||||||||||||| ||||| ||| | |    
T  8329776 cactagttaaggaactaaaagtagaaagaaaattcaagttttgcattaaaaagaacaccattttaactttcaaaaagtagaatacataatttccaaaata 8329677  T
Q  284 atattttcttttataatt 301  Q
    |||||| ||| |||||||    
T  8329676 atatttccttatataatt 8329659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 35470309 - 35470385
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||| |||| |||||| | |||||||||| ||||    
T  35470309 tttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaaccagtgccccgg 35470385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 319
Target Start/End: Original strand, 6599338 - 6599467
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatactttt-ttaacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    ||||| |||||||| ||||||||||||| | | ||| ||| |||||| | | |||| |||||||| |||||||| ||||||||| ||||||  ||  |||    
T  6599338 ttaagaaactaaaagtagaaagaaaagtcaagttttgcattgaaaagtacattttttttaactttcaaaaagtataatacacaa-tttcaactcagaatt 6599436  T
Q  289 ttcttttataatttcctaaccagtgctccgg 319  Q
    | ||||||||||||| |||||||||| ||||    
T  6599437 tccttttataatttcttaaccagtgccccgg 6599467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 29740782 - 29740694
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    |||| ||| |||||||||| |||||||||||| |||||||||||| | ||| ||||||| |||||  |||||| |||  ||||||||||    
T  29740782 gaaatgaacacttttttaaattttaaaaagtaaaatacacaatttcctagaaaatatttcctttttaaatttcttaagtagtgctccgg 29740694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 15988843 - 15988936
Alignment:
Q  205 tagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttata 298  Q
    |||||| ||||||||   |||||||  ||||| | ||||||| |||||| | |||||||||||||||||||||| || |||||||  |||||||    
T  15988843 tagaaataaaagtaaaactttacattaaaaagtacactttttcaactttcagaaagtagaatacacaattttcatgagaatatttcgttttata 15988936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 19511124 - 19511212
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagt 312  Q
    ||||||| ||||| || |||||||||| ||| |||||||||| || | ||||| |||||||||||||  | |||||||||| ||||||||    
T  19511124 tttacattgaaaacaacacttttttaattttgaaaaagtaga-tagataatttccaagacaatatttcatcttataatttcttaaccagt 19511212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 36101064 - 36100998
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||||||||| |||||||||||||||    || ||||||||||||| ||||||||||||| |||| ||||    
T  36101064 tttttaactttcaaaaagtagaataca----ttccaagacaatatttccttttataatttcttaacaagtg 36100998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 9620621 - 9620689
Alignment:
Q  233 aaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||| |||||||||| ||||||||||||||||| |||||||| || |  ||||||  ||||||||||    
T  9620621 aaagaacacttttttaatttttaaaaagtagaatatacaatttttaaaaatatatttctttttataatt 9620689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 45134519 - 45134472
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaa 279  Q
    ||||||| ||||||| || |||||||||||| ||||||||||||||||    
T  45134519 aaaagaacactttttcaagttttaaaaagtaaaatacacaattttcaa 45134472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 28580411 - 28580481
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||| || ||||| |||||||||||| || ||||||||||||  |  | |||||||||||||||||||    
T  28580411 gaaaagagtaatttttcaacttttaaaaaataaaatacacaatttctataaaaatattttcttttataatt 28580481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 45326726 - 45326764
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  45326726 tttttaacttttaaaagatagaatacacaattttcaaga 45326764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 15658866 - 15658790
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    ||||||||||||||||  ||||||||||||||| |||   ||||||| |||| |||||| | ||| |||||| ||||    
T  15658866 tttttaacttttaaaacatagaatacacaatttccaatgaaatatttcctttaataattccttaatcagtgccccgg 15658790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 42753448 - 42753492
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataa 299  Q
    |||||||||||||||  ||||| |||| |||||||||||||||||    
T  42753448 aaaaagtagaatacatgatttttaagataatattttcttttataa 42753492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 38833082 - 38832948
Alignment:
Q  185 actaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaa--tacttttttaacttttaaaaagtagaatacacaattttcaagac 282  Q
    |||||||||||||||||||||| |||||||||| |   ||| ||| ||||||||  ||||||||||||||| ||||||||||||||| ||||||||| ||    
T  38833082 actaattaaggaactaaaaataaaaagaaaagttaaattttgcattgaaaagaacatacttttttaactttcaaaaagtagaatacataattttcaatac 38832983  T
Q  283 aatattttcttttataatttcctaaccagtgctcc 317  Q
    ||||||| ||||||||||||| |||||| ||||||    
T  38832982 aatatttccttttataatttcttaaccaatgctcc 38832948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 40892913 - 40892802
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| ||||||| ||||| | | ||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||| ||||| |||||||    
T  40892913 ttaaggaactaaaagtagaaaggaaagtcaagttttgcattgaaaagaacactttattaactttcaaaaagtagaatacacaatttccaagaaaatattt 40892814  T
Q  290 tcttttataatt 301  Q
     |||||||||||    
T  40892813 ccttttataatt 40892802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 53653237 - 53653104
Alignment:
Q  185 actaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaa 284  Q
    |||| |||| ||||||||| ||||||||||||| |   |||| || |||||||| |||||||||||||| ||||||||||||||||||||||||| | ||    
T  53653237 actagttaaagaactaaaagtagaaagaaaagtcaatttttatattgaaaagaacacttttttaacttt-aaaaagtagaatacacaattttcaatataa 53653139  T
Q  285 tattttcttttataatttcctaaccagtgctccgg 319  Q
     ||||||||||||||||   |||||||||| ||||    
T  53653138 aattttcttttataattctttaaccagtgccccgg 53653104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 51459881 - 51459781
Alignment:
Q  185 actaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaa-tacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    |||| ||||| |||||||| || |||||||||||| | ||| ||| ||||| || || |||||||||||||||||||||||||||||||||||| |||||    
T  51459881 actagttaagtaactaaaagtataaagaaaagtaaagttttgcattgaaaaaaaataattttttaacttttaaaaagtagaatacacaattttcgagaca 51459782  T
Q  284 a 284  Q
    |    
T  51459781 a 51459781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 29793537 - 29793450
Alignment:
Q  198 ctaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaat 285  Q
    ||||||||| |||||||||| |   |||||||  ||||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  29793537 ctaaaaataaaaagaaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaagtaaaatacacaatttccaagacaat 29793450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 51490200 - 51490267
Alignment:
Q  234 aagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||| |||||||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||    
T  51490200 aagaacacttttttaactttcaaaaggtataatacaaaattttcaagagaatattttcttttataatt 51490267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 32497828 - 32497902
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctc 316  Q
    ||||| |||||| |||||||| |||||||||||||| ||| ||||||| ||||||||||||| |||| |||||||    
T  32497828 tttttaaactttcaaaaagtataatacacaattttcgagataatatttacttttataatttcttaacaagtgctc 32497902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 36754856 - 36754737
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    |||||||||||||||||||||| || |||||||| | | | ||| | | |||||||| |||||||||||||| || |  || |||| |||||||  || |    
T  36754856 gacactaattaaggaactaaaagtaaaaagaaaactcaagttttgcgttgaaaagaacacttttttaactttaaatagatataatatacaatttctaata 36754757  T
Q  282 caatattttcttttataatt 301  Q
    |||| |||||||||||||||    
T  36754756 caatgttttcttttataatt 36754737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 301
Target Start/End: Complemental strand, 23086508 - 23086450
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||||||||| ||||||||||||  || |||||||||| ||||||||||    
T  23086508 tttttaacttttaaaaagtataatacacaatttctaaaacaatatttttttttataatt 23086450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 23089297 - 23089355
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||||||||| ||||||||||||  || |||| ||||||||||||||||    
T  23089297 tttttaacttttaaaaagtataatacacaatttctaaaacaaaattttcttttataatt 23089355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 9099170 - 9099231
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||| ||||||| |||||||| |||| ||| ||||||||| |||||||||||    
T  9099170 acttttttaactttcaaaaagttgaatacacgatttccaatacaatatttccttttataatt 9099231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 52763073 - 52762988
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattt 275  Q
    ||||||||| |||| ||||||||||||| | | ||| ||| ||||||||  ||||||||||||| || |||||||||||| |||||    
T  52763073 ttaaggaaccaaaagtagaaagaaaagtcaagttttgcattgaaaagaactcttttttaactttcaagaagtagaatacataattt 52762988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 31977262 - 31977334
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    |||||||||| |||||||||||||||||||||||  | ||||| |||| |||||||||||   ||||||||||    
T  31977262 ttttttaactattaaaaagtagaatacacaatttctaggacaaaatttccttttataattcattaaccagtgc 31977334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 314
Target Start/End: Original strand, 50662423 - 50662547
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| || ||| |||||| |   |||  || |||||||| | |||||| ||||| ||||||||||||| | ||||| ||| | |||||||    
T  50662423 ttaaggaactaaaagtataaataaaagtcaaattttgtattgaaaagaacatttttttgactttcaaaaagtagaatagaaaatttccaatataatattt 50662522  T
Q  290 tcttttataatttcctaaccagtgc 314  Q
    | |||||||||| | ||||||||||    
T  50662523 tattttataattccttaaccagtgc 50662547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 37677414 - 37677367
Alignment:
Q  248 aacttttaaaaagtagaatacacaattttcaagacaatattttctttt 295  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  37677414 aacttttaaaaaatagaatacacaattttcaagaaaatatttcctttt 37677367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 28233519 - 28233469
Alignment:
Q  251 ttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||||||||||||| ||||||||||||| | ||||| |||||||||||    
T  28233519 ttttaaaaagtagaataaacaattttcaagatagtatttccttttataatt 28233469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 27659744 - 27659813
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||| |||||||||| |||||| ||||| ||||||||||||||||||| | | |||||  ||||||||||    
T  27659744 aaaataatactttttcaactttcaaaaaatagaatacacaattttcaaaaaattatttcattttataatt 27659813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 6876290 - 6876246
Alignment:
Q  257 aaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||    
T  6876290 aaagtagaatacacaattttcaagacaaaatttcattttataatt 6876246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 46476477 - 46476545
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaa-agtagaatacacaattttcaagacaatatttt 290  Q
    |||||||  ||||||| |||||||| ||||| |||| ||||||||||| ||||||||||| ||||||||    
T  46476477 tttacattaaaaagaacactttttttactttcaaaaaagtagaatacataattttcaagagaatatttt 46476545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 303
Target Start/End: Complemental strand, 34664376 - 34664269
Alignment:
Q  196 aactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttctttt 295  Q
    |||||||| || ||||||||   ||| ||| ||| ||||||| |  ||||| |||||||||||| ||||||||| ||||| ||| | ||||||| || ||    
T  34664376 aactaaaagtaaaaagaaaatacatgttttgcattgaaaagagtcatttttcaacttttaaaaaatagaatacataatttccaataaaatatttcctatt 34664277  T
Q  296 ataatttc 303  Q
    ||||||||    
T  34664276 ataatttc 34664269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 39149258 - 39149167
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattt 275  Q
    |||| |||||| || ||||| ||||||||||||  ||| ||| ||| ||||| || | | ||| |||||||||||| |||||||||||||||    
T  39149258 cactgattaagaaattaaaagtagaaagaaaagatatgatttgcattgaaaataacaatatttcaacttttaaaaaatagaatacacaattt 39149167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 49980365 - 49980306
Alignment:
Q  258 aagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctcc 317  Q
    |||||||||||||||||| ||||| ||||||| |||| |||||| | |||| ||||||||    
T  49980365 aagtagaatacacaatttccaagataatatttcctttcataattccttaacaagtgctcc 49980306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 4275548 - 4275510
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaag 280  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  4275548 ttttttaacttttaaaacatagaatacacaattttcaag 4275510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 55142341 - 55142399
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||| ||| ||||  ||||||||||||||| ||| | |||||||||||||||||||    
T  55142341 tttttaaatttcaaaacatagaatacacaatttccaaaaaaatattttcttttataatt 55142399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 31330645 - 31330528
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||||||||||||||||| | | |||| ||  ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  31330645 cactagttaaggaactaaaaatagaaagaaaagtcaagttttatattaaaaagaacacttttttaactttcaaaaagtagaatacacaattttcaagaca 31330546  T
Q  284 atattttcttttataatt 301  Q
    | |||| || ||||||||    
T  31330545 aaatttcctcttataatt 31330528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 327
Target Start/End: Original strand, 21608196 - 21608286
Alignment:
Q  237 aatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccggttaacatt 327  Q
    |||| ||||| || |||||||||||| ||||||||||||| |||| || |||||||||||||||||| |||||||||   |||||||||||    
T  21608196 aatattttttcaaattttaaaaagtaaaatacacaattttgaagaaaaaattttcttttataatttcttaaccagtgtctcggttaacatt 21608286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 298
Target Start/End: Original strand, 9245936 - 9246044
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| ||||||  ||||| |   |||  || ||||| || |||||||||||||| |||||||||||| ||||||||| |||| |||||||    
T  9245936 ttaaggaactaaaagtagaaaataaagtcaatttttgtattgaaaataacacttttttaactttcaaaaagtagaatgcacaatttttaagaaaatattt 9246035  T
Q  290 tcttttata 298  Q
    | |||||||    
T  9246036 ttttttata 9246044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 289
Target Start/End: Complemental strand, 11393769 - 11393685
Alignment:
Q  205 tagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||||||||| | | | ||| |||||||||||| |||||||||||||| ||||| || ||||| |||||| |||||||||||||    
T  11393769 tagaaagaaaactcaagttttgcatcgaaaagaacacttttttaactttcaaaaaataaaatacccaatttccaagacaatattt 11393685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 2667471 - 2667396
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaa 259  Q
    ||||| |||||||||||||||||||||||||| | | | ||| ||| |||||||| |||||||||||||| |||||    
T  2667471 cactagttaaggaactaaaaatagaaagaaaatttaagttttgcattgaaaagaacacttttttaactttaaaaaa 2667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 2667135 - 2667080
Alignment:
Q  259 agtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| | ||||| ||||    
T  2667135 agtagaatacacaatttccaatacaatattttcttttataattccttaacccgtgc 2667080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 313
Target Start/End: Complemental strand, 29608569 - 29608446
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||| |||||||  |||||| |||||  | | ||||||| |||||||| | | |||||||||||||||| ||||||||| ||||| ||| |  ||||||    
T  29608569 ttaagaaactaaatttagaaataaaagataagatttacattgaaaagaacaatattttaacttttaaaaaatagaatacataatttccaaaaatatattt 29608470  T
Q  290 tcttttataatttcctaaccagtg 313  Q
     ||||| ||||||| |||| ||||    
T  29608469 ccttttttaatttcttaacaagtg 29608446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 300
Target Start/End: Original strand, 30533657 - 30533768
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatactttttt-aacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    |||||||  ||| ||||||||||||||  |   ||||||| ||||| ||  ||||||| |||||| ||||||||||||||||||||||||||  || |||    
T  30533657 ttaaggagttaagaatagaaagaaaagacaaattttacattgaaaataactcttttttcaactttcaaaaagtagaatacacaattttcaagttaacatt 30533756  T
Q  289 ttcttttataat 300  Q
    | ||||||||||    
T  30533757 tccttttataat 30533768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 2656480 - 2656426
Alignment:
Q  259 agtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| | |||||||||    
T  2656480 agtagaatacacaatttccaatataatattttcttttataattccttaaccagtg 2656426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 313
Target Start/End: Complemental strand, 31955731 - 31955650
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||| ||| ||||| || ||| |||||||| ||||||||||||||||   ||||||| ||||||||||||  |||||||||    
T  31955731 aaaaggatattttttcaagtttcaaaaagtaaaatacacaattttcaaataaatatttccttttataatttattaaccagtg 31955650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 12109264 - 12109394
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    |||| |||||||  |||||||| ||||||||||  |||   ||| |||  ||||||| || |||| |||||| ||||||| |||||  |||||| ||| |    
T  12109264 gacattaattaacaaactaaaagtagaaagaaagataaacttttgcattaaaaagaacaccttttcaacttt-aaaaagttgaatagccaatttccaaaa 12109362  T
Q  282 caatattttcttttataatttcctaaccagtg 313  Q
     ||||||||||||||||||||| |||| ||||    
T  12109363 aaatattttcttttataatttcttaacaagtg 12109394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 2158098 - 2158168
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||| |||||||| |||||||||||||| ||||||   |||| || |  ||||||||||||||||||    
T  2158098 gaaaagaacacttttttcacttttaaaaagtacaatacatggtttttaaaatcatattttcttttataatt 2158168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 646583 - 646655
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttc--aagacaatattttcttttataattt 302  Q
    |||||||||||| ||||| ||| |||||||||||| | |||||| |  || | ||||||||||||||||||||    
T  646583 aaaagaatacttctttaattttcaaaaagtagaatgcgcaatttccagaaaaaaatattttcttttataattt 646655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 8052274 - 8052205
Alignment:
Q  244 ttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    |||||||||||||||  ||||||||||||||| ||||  |  |||| ||||||||||||| ||| |||||    
T  8052274 ttttaacttttaaaacatagaatacacaatttccaaggaataatttccttttataatttcttaatcagtg 8052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 3882580 - 3882699
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaataca-caattttcaag 280  Q
    ||||||| ||||| |||||||| |||||||||||| ||   |||  || ||||||| || ||||| ||| || |||||||| |||||| |||||||  ||    
T  3882580 gacactagttaagaaactaaaagtagaaagaaaagaaagaatttgtattgaaaagagtaatttttcaaccttcaaaaagtataatacatcaatttt-gag 3882678  T
Q  281 acaatattttcttttataatt 301  Q
    | ||||||| |||||||||||    
T  3882679 ataatatttccttttataatt 3882699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 6030953 - 6031001
Alignment:
Q  251 ttttaaaaagtagaatacacaattttcaagacaatattttcttttataa 299  Q
    |||||||||| | ||||||||||||| |||| ||||||| |||||||||    
T  6030953 ttttaaaaagaataatacacaatttttaagaaaatatttccttttataa 6031001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 36619866 - 36619983
Alignment:
Q  183 acactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagac 282  Q
    |||||||||||| |||||||||||||||||||||| |   ||||||| |||||||| ||| ||| ||||||||||||||| |||||||||||| ||| ||    
T  36619866 acactaattaagaaactaaaaatagaaagaaaagtcaaattttacattgaaaagaacactatttaaacttttaaaaagtaaaatacacaatttccaatac 36619965  T
Q  283 aatattttcttttataat 300  Q
    ||||||| ||||||||||    
T  36619966 aatatttccttttataat 36619983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 32056298 - 32056376
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaacca 310  Q
    ||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||    
T  32056298 aaaagaacatttttttaacttttaaaaagtaaaatacacaattttcaagacaaaatttccttttataatttcttaacca 32056376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 47742730 - 47742856
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||| |||||||||| || |   |||| || |||||||| ||||||||||||||||||| ||| ||||||||| || ||||| |    
T  47742730 cactagttaaggaactaaaagtagaaagaaatgtcaaattttatattgaaaagaacacttttttaacttttaaaatgtataatacacaaattccaagata 47742829  T
Q  284 atattttcttttataatttcctaacca 310  Q
    |||||| ||||||||||| | ||||||    
T  47742830 atatttccttttataattccttaacca 47742856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 1955416 - 1955298
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatactttttt-aacttttaaaaagtagaatacacaattttcaagac 282  Q
    ||||| |||||||||||||| || |||||||||| |   ||| |||  ||||||| |||||||| |||||| ||||||| ||||| ||||||||||| ||    
T  1955416 cactagttaaggaactaaaattaaaaagaaaagtcaaatttttcattaaaaagaacactttttttaactttaaaaaagtcgaatatacaattttcaatac 1955317  T
Q  283 aatattttcttttataatt 301  Q
    |||||||||||||||||||    
T  1955316 aatattttcttttataatt 1955298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 36860417 - 36860288
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| ||||| |||||||| |||||| |||||| | | ||| ||| ||||| ||  ||||||| | ||| ||||||||||||||||||||| ||| |||    
T  36860417 cactagttaagaaactaaaagtagaaataaaagttaagttttgcattgaaaataa--ctttttttaatttcaaaaagtagaatacacaatttccaataca 36860320  T
Q  284 atattttcttttataatttcctaaccagtgct 315  Q
    ||||||  |||||||||||| |||||||||||    
T  36860319 atatttctttttataatttcttaaccagtgct 36860288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 21139254 - 21139373
Alignment:
Q  183 acactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagac 282  Q
    |||||| ||||  |||||||||||||||||||||| | | |||  ||  | | ||| ||||||| |||||| ||||||||||||||| |||||||||||     
T  21139254 acactagttaacaaactaaaaatagaaagaaaagttaagttttgtattaagatgaacactttttcaactttcaaaaagtagaatacataattttcaagat 21139353  T
Q  283 aatattttcttttataattt 302  Q
    ||| ||||||||||||||||    
T  21139354 aatgttttcttttataattt 21139373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 12763412 - 12763493
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagt 312  Q
    ||||| || ||||| |||||||| ||||||||||||||||| ||| ||| ||||||||||||||||||||| | ||||||||    
T  12763412 gaaaataacactttcttaactttcaaaaagtagaatacacagtttccaaaacaatattttcttttataattccttaaccagt 12763493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 49081254 - 49081358
Alignment:
Q  196 aactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttctttt 295  Q
    |||||||| |||||||||||| | || ||||||| |||||||  | | |||||||||||||||| ||||||||||||||||||| | ||||||| |||||    
T  49081254 aactaaaagtagaaagaaaagca-tgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaattttcaaaaaaatatttcctttt 49081352  T
Q  296 ataatt 301  Q
     |||||    
T  49081353 ctaatt 49081358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 53374989 - 53375047
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttata 298  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  53374989 actttttcaacttttaaaaagtagaatacacaatttccaagagaatatttccttttata 53375047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 26194621 - 26194529
Alignment:
Q  227 catcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    |||| ||||||| ||||||| || ||||||||||| ||||||||||||| ||||| |||||||  |||||||||| | |||| ||||| ||||    
T  26194621 catcaaaaagaacactttttcaatttttaaaaagttgaatacacaatttacaagataatatttcattttataattccttaacaagtgccccgg 26194529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 33033241 - 33033300
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||||||    
T  33033241 ttttttagcttttaaaacttagaatacacaatttccaagaaaatattttcttttataatt 33033300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 313
Target Start/End: Complemental strand, 48743584 - 48743461
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| ||||||||||| | |   ||| |||  |||| || | |||||||| ||| |||||||  ||| |||||||| ||| |||||||||    
T  48743584 ttaaggaactaaaagtagaaagaaaaatcaaattttgcattaaaaacaacatttttttaattttcaaaaagtgaaatgcacaatttccaatacaatattt 48743485  T
Q  290 tcttttataatttcctaaccagtg 313  Q
     ||||||||||||| |||||||||    
T  48743484 ccttttataatttcttaaccagtg 48743461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 47089280 - 47089206
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    ||||||| || ||| |||||||| |||||||||||||||||| || |||| ||||||||||| | ||||||||||    
T  47089280 actttttcaagtttcaaaaagtaaaatacacaattttcaagaaaacatttccttttataattccttaaccagtgc 47089206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 34015849 - 34015732
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| ||||||||| |||| ||||||||||| | | | |||  || ||||| || || ||||||  ||| ||||||||||||| ||||||| ||| |||    
T  34015849 cactagttaaggaaccaaaagtagaaagaaaaattaagttttgtattgaaaaaaacacctttttatttttcaaaaagtagaatatacaatttccaaaaca 34015750  T
Q  284 atattttcttttataatt 301  Q
    | ||||||||||||||||    
T  34015749 aaattttcttttataatt 34015732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 314
Target Start/End: Complemental strand, 1051855 - 1051783
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    |||||||||||||||||  ||||||||||||||||||||  ||||||| |||| |||||| | ||| ||||||    
T  1051855 ttttttaacttttaaaacatagaatacacaattttcaaggaaatatttcctttaataattccttaatcagtgc 1051783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 7633179 - 7633249
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagt 312  Q
    |||||||||||||||||  ||||||||||||||||||| | |  |||| ||||||||||| | ||||||||    
T  7633179 ttttttaacttttaaaatatagaatacacaattttcaaaaaatcatttccttttataattccttaaccagt 7633249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 310
Target Start/End: Original strand, 42274287 - 42274401
Alignment:
Q  196 aactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttctttt 295  Q
    |||||||| ||||||||||||  | | |||||||  ||||||  | | ||| |||||||||||| ||||| ||||||||||||| | ||||||| |||||    
T  42274287 aactaaaagtagaaagaaaagacaagatttacattaaaaagagaaatatttcaacttttaaaaaatagaacacacaattttcaaaaaaatatttcctttt 42274386  T
Q  296 ataatttcctaacca 310  Q
     ||||| | ||||||    
T  42274387 ctaattacttaacca 42274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 41454948 - 41454997
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    |||| ||||||||||||||||| ||||| || ||||||||||||||||||    
T  41454948 aaaaaaatacttttttaactttcaaaaaataaaatacacaattttcaaga 41454997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 42915810 - 42915749
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||| |||||||||||| |||||||||||| ||| | || |||||||||| |||||    
T  42915810 acttttttaagttttaaaaagtaaaatacacaatttccaaaaaaacattttcttttgtaatt 42915749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 12069391 - 12069459
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaacca 310  Q
    |||| ||||||| ||||||||| ||||||||||||||||| || |||   |||||||||||| ||||||    
T  12069391 ttttctaactttaaaaaagtagtatacacaattttcaagataacattacattttataatttcttaacca 12069459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 38609151 - 38609087
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    |||||||| |||||||||||||| ||| || |||| ||||||||||| | |||||||||| ||||    
T  38609151 aaaaagtaaaatacacaattttcgagaaaacatttccttttataattccttaaccagtgccccgg 38609087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 20922745 - 20922683
Alignment:
Q  256 aaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccg 318  Q
    ||||||| |||| ||||||| ||||| || |||||||||||||||| | |||| |||||||||    
T  20922745 aaaagtaaaatatacaatttccaagaaaacattttcttttataattccttaactagtgctccg 20922683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 275
Target Start/End: Original strand, 37858387 - 37858472
Alignment:
Q  191 taaggaactaaaaa-tagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattt 275  Q
    |||| ||||||||| |||||||||||   ||| ||| ||| |||||||||| | ||| |||||||| ||| |||||||||||||||    
T  37858387 taagaaactaaaaagtagaaagaaaatacatgatttgcattgaaaagaataatatttcaacttttataaaatagaatacacaattt 37858472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 45418922 - 45418872
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttc 277  Q
    ||||||||||||| ||||    ||||||||||||||||| |||||||||||||||    
T  45418922 tttacatcgaaaacaata----tttaacttttaaaaagttgaatacacaattttc 45418872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 14171934 - 14171826
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| ||||||||||||| | | ||| ||| ||||| || | |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  14171934 ttaaggaactaaaagtagaaagaaaagtgaagttttgcattgaaaaaaacatttttttaactttcaaaaagtaaaatacacaattttcaagacaatattt 14171835  T
Q  290 tcttttata 298  Q
    |||||||||    
T  14171834 tcttttata 14171826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 184 - 301
Target Start/End: Complemental strand, 964079 - 963962
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||| |||| |||| || |||||||||| | | ||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  964079 cactagttaaagaacaaaaattaaaaagaaaagttaagttttacattgaaaagaacacttttttaactttgaaaaagtagaatacacaatttccaagaca 963980  T
Q  284 atattttcttttataatt 301  Q
    |||||| || ||||||||    
T  963979 atatttcctattataatt 963962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 26127386 - 26127286
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||| ||||||||||||| |   ||||||| ||||| || |||||||||||||| ||||||||||||||||||||| |||||||    
T  26127386 cactagttaaggaactaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaactttcaaaaagtagaatacacaatttccaagaca 26127287  T
Q  284 a 284  Q
    |    
T  26127286 a 26127286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 298
Target Start/End: Complemental strand, 35285589 - 35285484
Alignment:
Q  193 aggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttct 292  Q
    ||||||||||| ||||||||||||| |   ||||||| ||||| || |||||||||||||||||||| || ||||||||||||  || |||||||||| |    
T  35285589 aggaactaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaacttttaaaaaataaaatacacaatttctaatacaatattttat 35285490  T
Q  293 tttata 298  Q
    ||||||    
T  35285489 tttata 35285484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 182 - 308
Target Start/End: Original strand, 49065938 - 49066063
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| |||||||| | ||| || ||||||||||||   ||| ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| |    
T  49065938 gacactagttaaggaaattaaagtaaaaagaaaagtaaaattttgcattgaaaaaaagacttttttaacttttaaaaagaaaaatacacaatttccaaaa 49066037  T
Q  282 caatattttcttttataatttcctaac 308  Q
     || |||||||||||||||||| ||||    
T  49066038 taa-attttcttttataatttcttaac 49066063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 43638388 - 43638456
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaacca 310  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  43638388 ttttttgattttcaaaaagtagaatacacaattttcaagacaatatttccttttataattccttaacca 43638456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 313
Target Start/End: Complemental strand, 35539041 - 35538951
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    |||||||  ||||||| |||||||||||||||||||| || |||||||| ||| ||| |||||||||  |||||||||||| |||| ||||    
T  35539041 tttacattaaaaagaacacttttttaacttttaaaaaataaaatacacagtttccaaaacaatatttcattttataatttcttaacaagtg 35538951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 38680364 - 38680465
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccggttaacatttcc 330  Q
    ||||| || ||||||||||||||| ||||||| |||  ||||||| | ||||||||||| ||||||||||  | ||| |||||   ||||||||||||||    
T  38680364 gaaaaaaacacttttttaactttttaaaagtataatttacaatttccgagacaatatttccttttataatcccttaatcagtgtctcggttaacatttcc 38680463  T
Q  331 ct 332  Q
    ||    
T  38680464 ct 38680465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 6395531 - 6395464
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaacca 310  Q
    ||||||||||||||||  || |||||||||||||||| | |||||||||||| |||||| | ||||||    
T  6395531 tttttaacttttaaaacataaaatacacaattttcaaaaaaatattttctttaataattccttaacca 6395464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 1411593 - 1411639
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||    
T  1411593 tttttaactatcaaaaagtagaatacacaatttttaagacaatattt 1411639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 15822734 - 15822686
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatatttt 290  Q
    |||||||||||| ||||| |||||| |||||||||||| ||||||||||    
T  15822734 ttttttaactttcaaaaaatagaatgcacaattttcaatacaatatttt 15822686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 31820789 - 31820733
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    ||||||| || |||| |||||||||||||||||||| |||||||| |||| ||||||    
T  31820789 aaaagaacacgttttgaacttttaaaaagtagaatatacaattttgaagataatatt 31820733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 19998585 - 19998640
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttat 297  Q
    |||||||||||||||||  |||||||||||||||||||   | |||||||||||||    
T  19998585 ttttttaacttttaaaatatagaatacacaattttcaaagaattattttcttttat 19998640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 47473921 - 47473835
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaataca 269  Q
    ||||| |||||||||||||||| ||||||||||| | | | ||| ||| ||||| || ||| |||||||||| |||||||||| ||||    
T  47473921 gacacaaattaaggaactaaaagtagaaagaaaaattaagttttgcattgaaaa-aacactgttttaactttcaaaaagtagattaca 47473835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 4612516 - 4612450
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttata 298  Q
    ||||||| ||||||| || ||| |||||||| |||| | ||||||||||| ||||||||||| ||||    
T  4612516 aaaagaacactttttcaagtttcaaaaagtaaaatagataattttcaagaaaatattttcttctata 4612450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 42888027 - 42887981
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||| |||||| ||||||||||| ||||||| |||||||||||    
T  42888027 aaaaagtaaaatacataattttcaagaaaatatttccttttataatt 42887981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 26537561 - 26537488
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtag-aatacacaattttcaagacaatattttcttttataatttc 303  Q
    ||||| || ||||||||||||||  |||||||| |||| ||||||||||| | | ||||| |||||||||||||    
T  26537561 gaaaataacacttttttaactttagaaaagtagtaatatacaattttcaaaatagtatttccttttataatttc 26537488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 46598282 - 46598214
Alignment:
Q  247 taacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgct 315  Q
    |||||| |||||| ||||||||| || |||||||| ||||||||||||  ||||| | ||| |||||||    
T  46598282 taacttgtaaaaaatagaatacataactttcaagaaaatattttctttcttaattccttaatcagtgct 46598214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 185442 - 185565
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| ||||||||||||| |   ||| ||| |||||||  |||||| ||| ||| ||||||||||||||||||||||||| |||||||||    
T  185442 ttaaggaactaaaagtagaaagaaaagttaaattttgcattgaaaagatcacttttctaattttcaaaaagtagaatacacaattttcaatacaatattt 185541  T
Q  290 tcttttataatttcctaaccagtg 313  Q
    |||||||||||| | |||||||||    
T  185542 tcttttataattccttaaccagtg 185565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 13015361 - 13015491
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| |||||||| ||||| ||||||||||||| | | ||| |||  |||| || |||||||||| ||| ||||||||||||||||||||| ||| |    
T  13015361 gacactagttaaggaaataaaagtagaaagaaaagttaagttttgcattaaaaacaacacttttttaattttcaaaaagtagaatacacaatttgcaata 13015460  T
Q  282 caatattttcttttataatttcctaaccagt 312  Q
    |||||||| ||||||||||||| ||| ||||    
T  13015461 caatatttacttttataatttcttaatcagt 13015491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 33986971 - 33986869
Alignment:
Q  196 aactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttctttt 295  Q
    |||||||| |||||||||||||||   ||| |||  ||||||| ||| |||||||||| |||||||| ||||||||||||| |||| |||||||||||||    
T  33986971 aactaaaagtagaaagaaaagtaaaattttgcattaaaaagaacactattttaactttcaaaaagtaaaatacacaattttaaagagaatattttctttt 33986872  T
Q  296 ata 298  Q
    |||    
T  33986871 ata 33986869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 41013353 - 41013260
Alignment:
Q  201 aaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttt 294  Q
    |||||| |||||||||| | | ||| ||| |||||||||| |||||||||||| || ||| ||||||||||||||||||||||| |||||||||    
T  41013353 aaaataaaaagaaaagttaagttttgcattgaaaagaatatttttttaactttcaagaagaagaatacacaattttcaagacaaaattttcttt 41013260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 34127779 - 34127649
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca-atatt 288  Q
    ||||| |||||||| | ||||||||||  ||| ||||||| |||||||  | | |||||||||||||||| ||||||||||||||| ||||| | |||||    
T  34127779 ttaagaaactaaaagtggaaagaaaaggcatgatttacattgaaaagagcaatattttaacttttaaaaaatagaatacacaatttccaagaaatatatt 34127680  T
Q  289 ttcttttataatttcctaaccagtgctccgg 319  Q
    | ||||| ||||| | |||||||||| ||||    
T  34127679 tccttttctaattccttaaccagtgccccgg 34127649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 42563316 - 42563182
Alignment:
Q  185 actaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaa 284  Q
    |||| |||| ||||||||| || || ||||||| |   ||||||| |||||||| | ||| |||||||| ||||| |||||| || ||||||||| ||||    
T  42563316 actagttaaagaactaaaagtaaaacgaaaagtcaatttttacattgaaaagaacaatttattaactttcaaaaaatagaatgcagaattttcaatacaa 42563217  T
Q  285 tattttcttttataatttcctaaccagtgctccgg 319  Q
    ||||| ||||||||||| | |||| ||||||||||    
T  42563216 tatttccttttataattccttaactagtgctccgg 42563182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 16938967 - 16938906
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||    
T  16938967 acttttttaactttaaaaaagtagaatacacaattttcaagacactatttcctcttataatt 16938906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 27924551 - 27924490
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||    
T  27924551 acttttttaactttcaaaaagtagaatacataattttcaagataatattttcttttctaatt 27924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 37940571 - 37940455
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| |||| ||| ||||| ||||||||||| | |   |||| ||  |||| || ||||||||||  |||||||||||||||||||||||| |||||    
T  37940571 gacactagttaaagaagtaaaagtagaaagaaaaatcaaattttatattaaaaaaaacacttttttaatatttaaaaagtagaatacacaatttccaaga 37940472  T
Q  282 caatattttcttttata 298  Q
     ||||||||||||||||    
T  37940471 taatattttcttttata 37940455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 18087221 - 18087296
Alignment:
Q  223 tttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttata 298  Q
    |||||||  ||||||| ||| |||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  18087221 tttacattaaaaagaacactgttttgactttcaaaaagtagaatacacaattttcaagagaatatttccttttata 18087296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 468131 - 468188
Alignment:
Q  245 tttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataattt 302  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  468131 tttaactttcaaaaagtagaatagacaattttcaaaacaatattttattttataattt 468188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 44362357 - 44362280
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||  |||||||||| | |||||| ||| ||||    
T  44362357 ttttttaactttcaaaaaatagaatacacaattttcaatacaatatttctttttataattccttaaccactgccccgg 44362280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 310
Target Start/End: Complemental strand, 44801590 - 44801470
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||| |||||||| ||||||||||| | |   ||||||| |||||||| ||||||| ||| || |||||| ||||| ||||||||  ||||||| ||||    
T  44801590 ttaagcaactaaaagtagaaagaaaaattaaaatttacattgaaaagaacactttttaaacattcaaaaagcagaatgcacaatttctaagacaaaattt 44801491  T
Q  290 tcttttataatttcctaacca 310  Q
     ||||||||||| | ||||||    
T  44801490 ccttttataattccttaacca 44801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 24184528 - 24184638
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagt-aatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    ||||||||| |||| || |||||||||| |||  ||| ||| |||||||  || ||||||| ||| |||||| |||||||||||||| ||| |||| |||    
T  24184528 ttaaggaacaaaaagtataaagaaaagtcaat--tttgcattgaaaagatcacatttttaattttcaaaaagcagaatacacaatttccaaaacaaaatt 24184625  T
Q  289 ttcttttataatt 301  Q
    |||||||||||||    
T  24184626 ttcttttataatt 24184638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 8457495 - 8457606
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||| |||||| | |||||| |||||  ||| ||||||| |||||||  |   ||| |||||||||||| ||||||||||||||| ||||| |||||||    
T  8457495 ttaagaaactaatagtagaaataaaagacatgatttacattgaaaagagcaacatttcaacttttaaaaaatagaatacacaatttccaagaaaatattt 8457594  T
Q  290 tcttttataatt 301  Q
     ||||| |||||    
T  8457595 ccttttctaatt 8457606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 7662304 - 7662374
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagt 312  Q
    |||| ||||||||||||  ||||||||||||||| ||| | ||||||| |||| |||||||| ||||||||    
T  7662304 ttttctaacttttaaaatatagaatacacaatttccaaaaaaatatttcctttaataatttcttaaccagt 7662374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 4366318 - 4366363
Alignment:
Q  244 ttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||    
T  4366318 ttttaacttttaaaaagtagaatacataattttcaaaataatattt 4366363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 30157746 - 30157794
Alignment:
Q  248 aacttttaaaaagtagaatacacaattttcaagacaatattttctttta 296  Q
    |||||| ||||||||||||||||||||| ||||| ||||||| ||||||    
T  30157746 aactttcaaaaagtagaatacacaatttccaagaaaatatttcctttta 30157794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 26491508 - 26491462
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||||||| ||||||||| ||| ||||||||| |||||||||||    
T  26491508 aaaaagtagaacacacaatttccaatacaatatttccttttataatt 26491462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 41646497 - 41646427
Alignment:
Q  244 ttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    |||||||||||||||| ||||||||||||||| ||||| | | ||| ||| | ||||| | ||||||||||    
T  41646497 ttttaacttttaaaaaatagaatacacaatttgcaagaaattttttccttatttaattccttaaccagtgc 41646427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 40891952 - 40891891
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctc 316  Q
    ||||| || ||||||||||| |||| | ||||||||||||||||||| | |||| |||||||    
T  40891952 aaaaaataaaatacacaattatcaaaaaaatattttcttttataattccttaactagtgctc 40891891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 314
Target Start/End: Original strand, 6221041 - 6221164
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||| | ||||||||||| |   |||  || ||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||| |    
T  6221041 ttaaggaactaaaagtggaaagaaaagtcaaattttttattgaaaagaatactttt-taactttcaaaaagtagaatatacaatttccaagacaatatct 6221139  T
Q  290 tcttttataatttcctaaccagtgc 314  Q
     ||||||||||| | ||||||||||    
T  6221140 ccttttataattccttaaccagtgc 6221164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 313
Target Start/End: Complemental strand, 9047220 - 9047092
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||| ||||||||| |||||| |||||| | | |||||||  |||| || |||||||||||||| |||||||||||| |||||||||||| |||    
T  9047220 cactagttaaagaactaaaagtagaaataaaagttaagttttacattaaaaa-aacacttttttaactttcaaaaagtagaatccacaattttcaataca 9047122  T
Q  284 atattttcttttataatttcctaaccagtg 313  Q
    | |||| ||||||| ||| | |||||||||    
T  9047121 aaatttccttttatgattccttaaccagtg 9047092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 317
Target Start/End: Original strand, 30898035 - 30898168
Alignment:
Q  184 cactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagaca 283  Q
    ||||| |||||||||||||| ||||||  ||||| | | ||| ||| | |||||| |  ||||||||||| ||||||||||||  ||| ||||||||| |    
T  30898035 cactagttaaggaactaaaagtagaaaataaagtcaagttttgcattggaaagaacatctttttaactttcaaaaagtagaatgtacagttttcaagaaa 30898134  T
Q  284 atattttcttttataatttcctaaccagtgctcc 317  Q
    |||||| ||||||||||| | |||| ||||||||    
T  30898135 atatttccttttataattccttaacaagtgctcc 30898168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 314
Target Start/End: Complemental strand, 45879229 - 45879108
Alignment:
Q  193 aggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttct 292  Q
    |||||| |||| ||||||||||||| | | |||  || ||||| || || |||||| |||| ||||||||||||||||||||| |||||||| |||| ||    
T  45879229 aggaaccaaaagtagaaagaaaagtcaagttttgtattgaaaaaaacacatttttacctttcaaaaagtagaatacacaatttccaagacaaaatttcct 45879130  T
Q  293 tttataatttcctaaccagtgc 314  Q
    ||||||||| | ||||| ||||    
T  45879129 tttataattccttaacctgtgc 45879108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 301
Target Start/End: Complemental strand, 22342414 - 22342314
Alignment:
Q  201 aaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataat 300  Q
    |||||| |||||||||  ||| ||||||| ||||| || ||| ||| |||||||||||  ||||||| |||||||||| || ||||||||||||| ||||    
T  22342414 aaaataaaaagaaaagatatgatttacattgaaaataacactatttcaacttttaaaacatagaatagacaattttcatgaaaatattttcttttctaat 22342315  T
Q  301 t 301  Q
    |    
T  22342314 t 22342314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 301
Target Start/End: Original strand, 40417683 - 40417742
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||| ||||| ||||| ||||||||| ||| |||||||||||||||||||||    
T  40417683 ttttttaactttcaaaaaatagaaaacacaatttccaaaacaatattttcttttataatt 40417742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 34224314 - 34224375
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||| |||||| ||||||||||||| ||||||||||||| |||| || | |||||||||    
T  34224314 actttttcaactttgaaaaagtagaatatacaattttcaagagaataattccatttataatt 34224375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 8919451 - 8919380
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    |||||||||||||||||  ||||||| ||||||||||| | |  |||| ||||||||||| | |||||||||    
T  8919451 ttttttaacttttaaaatatagaatatacaattttcaaaaaatcatttccttttataattccttaaccagtg 8919380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 24495335 - 24495370
Alignment:
Q  266 tacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||||| |||||||||||||||||||    
T  24495335 tacacaattttcaagataatattttcttttataatt 24495370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 25790121 - 25790192
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||| |||||| ||||| |||| || |||||||  |||| ||||||||||||||||||||| ||| |||||    
T  25790121 tttttcaactttaaaaaattagagtatacaatttctaagaaaatattttcttttataatttcttaatcagtg 25790192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 6975190 - 6975144
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    |||||||||||||||||||||| || |||||||||| || |||||||    
T  6975190 tttttaacttttaaaaagtagattatacaattttcaggataatattt 6975144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 30198380 - 30198327
Alignment:
Q  248 aacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||| |||||||||||||||  |||| ||||||| ||||| |||||    
T  30198380 aacttttaaaaaatagaatacacaatttctaagaaaatatttccttttctaatt 30198327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 28359806 - 28359734
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagta 262  Q
    |||||||||||||| ||||||||||||| |   ||| ||| ||||| |  |||||||||||||| ||||||||    
T  28359806 ttaaggaactaaaagtagaaagaaaagtcaaattttgcattgaaaatatcacttttttaactttcaaaaagta 28359734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 932241 - 932131
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| |||||||||||||| |||||| ||||  || | ||| ||| |||||||| | |||||||||||| |||||||| |||||||||||| ||| |    
T  932241 gacactagttaaggaactaaaagtagaaaaaaaatcaa-gttttgcattgaaaagaacatttttttaactttaaaaaagtaaaatacacaatttccaata 932143  T
Q  282 caatattttctt 293  Q
    ||||||||||||    
T  932142 caatattttctt 932131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 301
Target Start/End: Original strand, 32310929 - 32311040
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatac-ttttttaacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    |||||||||||||| |||||||||||||||   ||| ||| ||||| || || |||||||||||||||||| |||||||||||||  |||| ||| ||||    
T  32310929 ttaaggaactaaaagtagaaagaaaagtaaacttttgcattgaaaataacactttttttaacttttaaaaa-tagaatacacaatgatcaatacactatt 32311027  T
Q  289 ttcttttataatt 301  Q
    | |||||||||||    
T  32311028 tccttttataatt 32311040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 8590230 - 8590126
Alignment:
Q  194 ggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttctt 293  Q
    |||||||||| ||||||  ||||| |   ||| ||| ||||| || ||||||||||||||||||| ||| |||||||||||| ||| | |||||||||||    
T  8590230 ggaactaaaagtagaaaacaaagtcaaattttgcattgaaaataacacttttttaacttttaaaaggtaaaatacacaatttccaaaaaaatattttctt 8590131  T
Q  294 ttata 298  Q
    |||||    
T  8590130 ttata 8590126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Original strand, 19366802 - 19366862
Alignment:
Q  241 cttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||| |||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||    
T  19366802 ctttttcaactttcaaaaagtagaatacacaatttccaagacaatgtttccttttataatt 19366862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 26296444 - 26296508
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgctccgg 319  Q
    ||||||||||||||||||||| ||| ||||||||| |||||||||||   |||||||||||||||    
T  26296444 aaaaagtagaatacacaatttccaatacaatatttccttttataattctttaaccagtgctccgg 26296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 24181507 - 24181448
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||| | ||||||||||    
T  24181507 aaaaagtaaaatacacaattttcaatacaatatttccttttataattccttaaccagtgc 24181448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 5471543 - 5471589
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||    
T  5471543 aaaaagtagaatacacaatttttaagataatattttcttttataatt 5471589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 36301289 - 36301228
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||||||||||||||| ||| ||||||||||||  || | |||||||||||||||||||    
T  36301289 acttttttaacttttaaaatgtaaaatacacaatttctaaaataatattttcttttataatt 36301228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 41868817 - 41868886
Alignment:
Q  232 aaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||||| || || ||||||||||||||| ||||||||||||  |||| ||||||| |||||||||||    
T  41868817 aaaagaataattcttcaacttttaaaaagtaaaatacacaatttctaagataatatttccttttataatt 41868886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 26440194 - 26440118
Alignment:
Q  199 taaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattt 275  Q
    ||||| ||||||||||||| |   ||| |||  |||| || ||||||||||||||||||||||||||||||||||||    
T  26440194 taaaagtagaaagaaaagtcaaattttgcattaaaaataacacttttttaacttttaaaaagtagaatacacaattt 26440118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 14148276 - 14148376
Alignment:
Q  199 taaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttata 298  Q
    ||||||||||||||||||| |   |||  ||  |||||||||  ||||||||||| ||||||||||||||||||||| ||||| ||||| |  |||||||    
T  14148276 taaaaatagaaagaaaagtcaaattttgaattaaaaagaata--tttttaactttcaaaaagtagaatacacaatttccaagataatatgtctttttata 14148373  T
Q  299 att 301  Q
    |||    
T  14148374 att 14148376  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 19336829 - 19336899
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    |||||||||||| |||||||||||||||||||||| |||| |||| ||  |||||||||||| |||| ||||    
T  19336829 ttttttaactttcaaaaagtagaatacacaatttttaagaaaata-ttcattttataatttcttaacaagtg 19336899  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 24196398 - 24196492
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaaga-caatattttcttttataatttcctaaccagtgctccggttaacatttcccta 333  Q
    ||||||| || ||| |||||||| |||||||||||||||| |  || |||| |||||| |||| | |||| ||||| ||||||||||||||||||    
T  24196398 actttttcaaatttcaaaaagtaaaatacacaattttcaaaataaacatttccttttacaattccttaactagtgccccggttaacatttcccta 24196492  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 26295525 - 26295590
Alignment:
Q  205 tagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacac 270  Q
    ||||||| ||||| | | ||||||| |||||||| | |||||||||||||||||| ||||||||||    
T  26295525 tagaaagtaaagtcaagttttacattgaaaagaacatttttttaacttttaaaaaatagaatacac 26295590  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 33382297 - 33382358
Alignment:
Q  240 acttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||| ||| |||||||| |||||||||||||  ||| || ||||||||||||||||    
T  33382297 acttttttaagtttcaaaaagtaaaatacacaatttttgagaaaacattttcttttataatt 33382358  T

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Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 33054102 - 33054186
Alignment:
Q  231 gaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgct 315  Q
    ||||||||||  ||||||| |||| |||  |||||||||||||||| |||| |||||||  ||| |||||||| ||| |||||||    
T  33054102 gaaaagaataactttttaatttttcaaatatagaatacacaattttaaagaaaatatttcttttaataatttcttaatcagtgct 33054186  T

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Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 314
Target Start/End: Original strand, 9922948 - 9923019
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtgc 314  Q
    ||||||||||||||||  || ||||||||||||||||   |||||||||||| |||||| | ||||| ||||    
T  9922948 tttttaacttttaaaacatataatacacaattttcaaagaaatattttctttaataattccttaacctgtgc 9923019  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 5024924 - 5024954
Alignment:
Q  241 cttttttaacttttaaaaagtagaatacaca 271  Q
    |||||||||||||||||||||||||||||||    
T  5024924 cttttttaacttttaaaaagtagaatacaca 5024954  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 5412005 - 5412055
Alignment:
Q  251 ttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||||||| |||||||||||||| | | |||||||||||||| ||||    
T  5412005 ttttaaaaagtaaaatacacaattttcgaaaaaatattttcttttagaatt 5412055  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 7313198 - 7313312
Alignment:
Q  187 taattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaata 286  Q
    |||||||| |||||||||||| ||||||||  |   || | ||  |||| || ||||||| || ||| ||||||||  ||||||||||||||||| ||||    
T  7313198 taattaagcaactaaaaatagtaagaaaagataaaattaatattaaaaataacactttttcaagtttcaaaaagtaatatacacaattttcaagaaaata 7313297  T
Q  287 ttttcttttataatt 301  Q
    |||  ||||||||||    
T  7313298 tttctttttataatt 7313312  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 8955235 - 8955293
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||| || |||||||||||||| ||| |||||||| |||||||||||| |||| ||||    
T  8955235 aaaaactaaaatacacaattttcgagaaaatatttttttttataatttcttaactagtg 8955293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 24804388 - 24804422
Alignment:
Q  183 acactaattaaggaactaaaaatagaaagaaaagt 217  Q
    |||||| ||||||||||||||||||||||||||||    
T  24804388 acactagttaaggaactaaaaatagaaagaaaagt 24804422  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 5091903 - 5091774
Alignment:
Q  190 ttaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaagacaatattt 289  Q
    ||||| |||||||| ||||||||||||  | | |||   | |||||||  ||||||| |||||| |||||||| |||||||||||||| ||  ||  |||    
T  5091903 ttaagaaactaaaagtagaaagaaaagacaagatttgttttgaaaagagcactttttcaactttcaaaaagtataatacacaattttcgaggtaagtttt 5091804  T
Q  290 tcttttataatttcctaaccagtgctccgg 319  Q
     ||||||||||| | |||| ||||| ||||    
T  5091803 ccttttataattccttaacaagtgccccgg 5091774  T

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Target: scaffold0191 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 319
Target Start/End: Complemental strand, 4669 - 4532
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| |||||||||||||| ||||||||||||| | | | |  ||  ||||||| | ||| |||||||| ||||||| ||||||||||||||||| |    
T  4669 gacactagttaaggaactaaaagtagaaagaaaagtcaagttctgtattaaaaagaacattttattaactttcaaaaagtggaatacacaattttcaata 4570  T
Q  282 caatattttcttttataatttcctaaccagtgctccgg 319  Q
    ||||||||  |||||| |||   ||| |||||||||||    
T  4569 caatatttcattttattattctttaatcagtgctccgg 4532  T

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Target: scaffold0275 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 441 - 371
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatttcctaaccagtg 313  Q
    ||||||||||| ||| |||||| |||||| ||||||| |||| |||||||||||||||||| ||| |||||    
T  441 tttttaactttcaaacagtagactacacagttttcaaaacaaaattttcttttataatttcttaatcagtg 371  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 140246 - 140365
Alignment:
Q  182 gacactaattaaggaactaaaaatagaaagaaaagtaatggtttacatcgaaaagaatacttttttaacttttaaaaagtagaatacacaattttcaaga 281  Q
    ||||||| ||||||||| |||| ||||||| ||||| | | |||  || ||||| ||   |||||||||||| ||||| ||||||||| |||||||||||    
T  140246 gacactagttaaggaaccaaaagtagaaaggaaagtcaagttttgtattgaaaaaaaattttttttaactttcaaaaaatagaatacataattttcaaga 140345  T
Q  282 caatattttcttttataatt 301  Q
     || ||||  ||||||||||    
T  140346 taaaatttcattttataatt 140365  T

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Target: scaffold0257 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 18891 - 18845
Alignment:
Q  242 ttttttaacttttaaaaagtagaatacacaattttcaagacaatatt 288  Q
    ||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  18891 tttttcaactttcaaaaagtagaatacataattttcaagacaatatt 18845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 296
Target Start/End: Complemental strand, 7149 - 7096
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttctttta 296  Q
    ||||||||||||||||  ||||||||||||||||||||| | ||||| ||||||    
T  7149 tttttaacttttaaaatatagaatacacaattttcaagaaattatttcctttta 7096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 918 - 976
Alignment:
Q  243 tttttaacttttaaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    ||||||||||| ||| |||||| ||||| |||||||| |||| |||| |||||||||||    
T  918 tttttaactttcaaacagtagactacaccattttcaaaacaaaatttccttttataatt 976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0735 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 980 - 934
Alignment:
Q  255 aaaaagtagaatacacaattttcaagacaatattttcttttataatt 301  Q
    |||||||| |||||| ||||||||||| ||||||| |||||||||||    
T  980 aaaaagtaaaatacataattttcaagaaaatatttccttttataatt 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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