View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_high_21 (Length: 313)
Name: NF9026_high_21
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 32981286 - 32981476
Alignment:
| Q |
1 |
acgtggtatcctatataccagccgtcatggatcattaatcaaagagtggtataagaaccttggttcgacttgatcgaggagacggagttgatccttgtgt |
100 |
Q |
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| T |
32981286 |
acgtggtatccaatataccagccgtcatggatcattaataaaagagtggtataagaacattggttcgacttgatcgaggagagggagctgatccttgtgt |
32981385 |
T |
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| Q |
101 |
tggatgaagtataagatgtgaaagatattcacttaagagttaatttgttgaaattcaagtatgaatgattagtctcacatcaattatgaat |
191 |
Q |
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| T |
32981386 |
tggatgaagtataagatgtgaaagatattcacttaagagttagtttgttaaaattcaagtgtgaataattagtctcacatcaattatgaat |
32981476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 43355215 - 43355341
Alignment:
| Q |
166 |
tgattagtctcacatcaattatgaattagctaaatgttaatatataagagagatctcatattctcaatgctctaaagtttttggcatagatgtggtatcc |
265 |
Q |
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| T |
43355215 |
tgattagtctcacatcaattatgaattagctaaatgttaatgtata--agagatctcatactctcaatgttctaaagt-------------------tcc |
43355293 |
T |
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| Q |
266 |
tgatctcttggtgatcctaaaacattgactcgttgttgctctcaatcc |
313 |
Q |
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| T |
43355294 |
tgatctcttggtgatcctaaaacattgactcgttgttgctctcaatcc |
43355341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 37321249 - 37321207
Alignment:
| Q |
159 |
gtatgaatgattagtctcacatcaattatgaattagctaaatg |
201 |
Q |
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| T |
37321249 |
gtatgaatgattagtctcacatcaattatgaatgagctaaatg |
37321207 |
T |
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