View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_high_23 (Length: 265)
Name: NF9026_high_23
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 24455900 - 24455663
Alignment:
| Q |
11 |
tttcgtgttcaacattatctgaaatgtgtatagaggaatattctcagttaagcgactctgaagattctattaaggggccaagttaccctataaatcaagg |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455900 |
tttcatgttcaacattatctgaaatgtgtatagaggaatattctcagttaagcgactctgaagattctattaaggggccaagttaccctataaatcaagg |
24455801 |
T |
|
| Q |
111 |
gagcttgaaaatccaaccgagagatttaatggctagtagtagaatttctttaagctcaacatatgaagaccttgaattttctttcccaaacaaaaaattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
24455800 |
gagcttgaaaatccaaccgagagatttaatggctagtagtagaatttctttaagctcaacatatgaagacctagaatttgctttcccaaacaaaaaattt |
24455701 |
T |
|
| Q |
211 |
ctaccatccatgggtaatcatcttccaagactagttat |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24455700 |
ctaccatccatgggtaatcatcttccaagactagttat |
24455663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 24693854 - 24693929
Alignment:
| Q |
67 |
tctgaagattctattaaggggccaagttaccctataaatcaagggagcttgaaaatccaaccgagagatttaatgg |
142 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
24693854 |
tctgaagattctattaaggttttgagttaccctatgcatcaagggagcttggaaaaccaacctagagatttaatgg |
24693929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 147
Target Start/End: Complemental strand, 41369755 - 41369669
Alignment:
| Q |
61 |
agcgactctgaagattctattaaggggccaagttaccctataaatcaagggagcttgaaaatccaaccgagagatttaatggctagt |
147 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||||| | ||||||||||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
41369755 |
agcgaatcggaagattctattaaggtgccaagttaccctttgtatcaagggagcttgaaaattcaacatagagatttaatggttagt |
41369669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 41369917 - 41369855
Alignment:
| Q |
73 |
gattctattaaggggccaagttaccctataaatcaagggagcttgaaaatccaaccgagagat |
135 |
Q |
| |
|
|||||| |||||||| |||||||||| || |||||| ||||| ||||||||||| | |||||| |
|
|
| T |
41369917 |
gattctgttaaggggtcaagttaccccatgaatcaaaggagcatgaaaatccaagctagagat |
41369855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University