View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_high_24 (Length: 252)

Name: NF9026_high_24
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_high_24
NF9026_high_24
[»] chr1 (17 HSPs)
chr1 (30-233)||(13681337-13681540)
chr1 (30-233)||(13418772-13418972)
chr1 (40-233)||(13607250-13607440)
chr1 (40-233)||(13502670-13502860)
chr1 (30-233)||(15902450-15902650)
chr1 (30-228)||(13646734-13646929)
chr1 (124-233)||(16471750-16471859)
chr1 (108-228)||(13580993-13581113)
chr1 (30-228)||(19142102-19142297)
chr1 (30-228)||(20474223-20474418)
chr1 (30-228)||(20557134-20557329)
chr1 (124-234)||(13667251-13667361)
chr1 (124-234)||(20365142-20365252)
chr1 (124-203)||(13539937-13540016)
chr1 (5-33)||(13419029-13419057)
chr1 (5-33)||(13502930-13502958)
chr1 (5-33)||(13607510-13607538)
[»] scaffold0006 (6 HSPs)
scaffold0006 (40-233)||(51516-51706)
scaffold0006 (40-233)||(135910-136100)
scaffold0006 (29-224)||(101297-101489)
scaffold0006 (124-234)||(164866-164976)
scaffold0006 (5-33)||(51776-51804)
scaffold0006 (5-33)||(136170-136198)
[»] chr6 (1 HSPs)
chr6 (29-224)||(21810964-21811156)
[»] scaffold0069 (1 HSPs)
scaffold0069 (30-228)||(23157-23352)
[»] chr2 (1 HSPs)
chr2 (30-228)||(38060950-38061145)
[»] scaffold0406 (1 HSPs)
scaffold0406 (126-228)||(11509-11611)
[»] chr8 (1 HSPs)
chr8 (30-203)||(20817970-20818140)
[»] scaffold0068 (1 HSPs)
scaffold0068 (124-203)||(44444-44523)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 13681540 - 13681337
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||||||||| ||||||||||||| |||  ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13681540 atctcttgttgaggaggacgctactacatctagagggggaaagtgaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 13681441  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13681440 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagct 13681341  T
Q  230 gatt 233  Q
    ||||    
T  13681340 gatt 13681337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 13418972 - 13418772
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||   |||||||||||||||||||    
T  13418972 atctcttgttgaggaggaggctactacatctagaggaggaaggtgaccaaatgaattaaacttttctttcccttgaac---ttcaacaacattatttgca 13418876  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagct 229  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  13418875 atttttgtggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgtgagaatcgttttgaagtt 13418776  T
Q  230 gatt 233  Q
    ||||    
T  13418775 gatt 13418772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 13607440 - 13607250
Alignment:
Q  40 gaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgcaatttttctgg 139  Q
    |||||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||    
T  13607440 gaggaggaggctactacatctagagggggaaggtgaccaaatgaattaaacttttctttcccttgaac---ttcaacaacattatttgcaatttttgtgg 13607344  T
Q  140 cattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagctgatt 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  13607343 cattcctacttagttgatgacgcaaaattaaatttggaaatgaccatggtgagcacctaacatttgcattgtgagaatcgttttgaagttgatt 13607250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 13502860 - 13502670
Alignment:
Q  40 gaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgcaatttttctgg 139  Q
    |||||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||    
T  13502860 gaggaggaggctactacatctagagggggaaggtgaccaaatgaattaaacttttctttcccttgaac---ttcaacaacattatttgcaatttttgtgg 13502764  T
Q  140 cattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagctgatt 233  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  13502763 cattcctacttagttgatgacgcaaaattaaatttggaaatgaccaaggtgagcacctaacatttgcattgagagaatcgttttgaagatgatt 13502670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 15902450 - 15902650
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    ||||||||||| | | |||||||||||||||| |||  ||||||||||||||  || |||  |  |||| ||||||||   || ||||||||   |||||    
T  15902450 atctcttgttgggaatgaggctactacatctagagggggaaggtaaccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatctgttgca 15902546  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagct 229  Q
    |||||| ||||||||||||||||||||||||| ||||  || || ||||| ||| ||| |||||||| | |||| | |  ||||| ||||||||||||||    
T  15902547 atttttgtggcattcctacttagttgatgacgtaaaaccaagttagggaacgacaatgctgagcacccaccattgggacggcgaggatcgttttgaagct 15902646  T
Q  230 gatt 233  Q
    ||||    
T  15902647 gatt 15902650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 13646929 - 13646734
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||| ||||||||||| || |||||||  |||  ||||||||||||||  || |||  |  |||| ||||||||   || ||||||||  ||||||    
T  13646929 atctcttggtgaggaggagggtaatacatctggagggggaaggtaaccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttgca 13646833  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    |||||| |||| |||||||||||||||||||| ||||| || || |||||  |||||| ||||||||||||||| | |   |||| |||||||||||||    
T  13646832 atttttgtggctttcctacttagttgatgacgtaaaatcaagttggggaacaaccatgttgagcacctaacattgggacgacgaggatcgttttgaagc 13646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 16471750 - 16471859
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgtttt 223  Q
    ||||||| |||| |||| ||||||||||||| ||||| |||||| ||||| ||||| ||||||| |||||||||||||||||||   |||| |||  |||    
T  16471750 tttgcaacttttgtggctttcctacttagttcatgacacaaaatcaaattggggaacgaccatgttgagcacctaacatttgcacgacgaggatctcttt 16471849  T
Q  224 gaagctgatt 233  Q
    ||||||||||    
T  16471850 gaagctgatt 16471859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 13581113 - 13580993
Alignment:
Q  108 aacttcaacaacattatttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgca 207  Q
    ||||| ||||||||  |||  ||||||| | || |||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| | |    
T  13581113 aacttgaacaacatcgtttttaatttttgtagctttcctacttagttgatgacgtaaaatcaagttggggaatgaccatgctgagcacctaacattggga 13581014  T
Q  208 ttgcgagaatcgttttgaagc 228  Q
    |  |||| |||||||||||||    
T  13581013 tgacgaggatcgttttgaagc 13580993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 19142102 - 19142297
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||||||||||||||||||||||| |||  ||| ||||||||||  || |||  |  |||| ||| ||||   || ||||||||  ||||||    
T  19142102 atctcttgttgaggaggaggctactacatctagagggggaaagtaaccaacttgatcaaaaatcccttttcctcgaac---ttgaacaacatcttttgca 19142198  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    |||||| |||| |||||||||||||||||||  ||||  || || | ||| ||| ||| ||||||||  ||||| |||  ||||| |||||||||||||    
T  19142199 atttttgtggctttcctacttagttgatgacataaaaccaagttggagaacgacaatgttgagcaccggacattggcacggcgaggatcgttttgaagc 19142297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 20474418 - 20474223
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||| ||||||||||||||||||| |||  ||| ||||||||||  || |||  |  |||| ||||||||   || ||||||||  ||||||    
T  20474418 atctcttgttgacgaggaggctactacatctagagggggaaagtaaccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttgca 20474322  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    |||||| |||| |||||||||||||||||||| ||||  || || |||||  || ||| |||||||||  |||| |||   |||| |||||||||||||    
T  20474321 atttttgtggctttcctacttagttgatgacgtaaaaccaagttggggaacaacaatgttgagcacctggcattggcacgacgaggatcgttttgaagc 20474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 20557134 - 20557329
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||| ||||||||||||||||||| |||  ||| ||||||||||  || |||  |  |||| ||||||||   || ||||||||  ||||||    
T  20557134 atctcttgttgacgaggaggctactacatctagagggggaaagtaaccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttgca 20557230  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    |||||| |||| |||||||||||||||||||| ||||  || || |||||  || ||| |||||||||  |||| |||   |||| |||||||||||||    
T  20557231 atttttgtggctttcctacttagttgatgacgtaaaaccaagttggggaacaacaatgttgagcacctggcattggcacgacgaggatcgttttgaagc 20557329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 13667361 - 13667251
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgtttt 223  Q
    |||| ||||||| | || |||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| | |   |||| ||||||||    
T  13667361 tttgtaatttttgtagctttcctacttagttgatgacgtaaaatcaagttggggaatgaccatgctgagcacctaacattgggacgacgaggatcgtttt 13667262  T
Q  224 gaagctgattt 234  Q
    ||||| |||||    
T  13667261 gaagccgattt 13667251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 20365252 - 20365142
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgtttt 223  Q
    |||| ||||||| | || |||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| | |   |||| ||||||||    
T  20365252 tttgtaatttttgtagctttcctacttagttgatgacgtaaaatcaagttggggaatgaccatgctgagcacctaacattgggacgacgaggatcgtttt 20365153  T
Q  224 gaagctgattt 234  Q
    ||||| |||||    
T  20365152 gaagccgattt 20365142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 13540016 - 13539937
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatt 203  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||  || || ||||| ||| ||| |||||||||||||||    
T  13540016 tttgcaatttttgtggctttcctacttaattgatgacgtaaaaccaagttagggaacgacgatgctgagcacctaacatt 13539937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 13419029 - 13419057
Alignment:
Q  5 agattctacttcatgcaacattgggatct 33  Q
    |||||||||||||||||||||||||||||    
T  13419029 agattctacttcatgcaacattgggatct 13419057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 13502930 - 13502958
Alignment:
Q  5 agattctacttcatgcaacattgggatct 33  Q
    |||||||||||||||||||||||||||||    
T  13502930 agattctacttcatgcaacattgggatct 13502958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 13607510 - 13607538
Alignment:
Q  5 agattctacttcatgcaacattgggatct 33  Q
    |||||||||||||||||||||||||||||    
T  13607510 agattctacttcatgcaacattgggatct 13607538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 51706 - 51516
Alignment:
Q  40 gaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgcaatttttctgg 139  Q
    |||||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||    
T  51706 gaggaggaggctactacatctagagggggaaggtgaccaaatgaattaaacttttctttcccttgaac---ttcaacaacattatttgcaatttttgtgg 51610  T
Q  140 cattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagctgatt 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51609 cattcctacttagttgatgacgcaaaattaaatttgggaatgaccaaggtgagcacctaacatttgcattgcgagaatcgttttgaagctgatt 51516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 40 - 233
Target Start/End: Complemental strand, 136100 - 135910
Alignment:
Q  40 gaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgcaatttttctgg 139  Q
    |||||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||    
T  136100 gaggaggaggctactacatctagagggggaaggtgaccaaatgaattaaacttttctttcccttgaac---ttcaacaacattatttgcaatttttgtgg 136004  T
Q  140 cattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagctgatt 233  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  136003 cattcctacttagttgatgacgcaaaattaaatttggaaatgaccatggtgagcacctaacatttgcattgtgagaatcgttttgaagttgatt 135910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 101489 - 101297
Alignment:
Q  29 gatctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgc 128  Q
    |||||||||||||||| |||||||||||||||| |||  ||||||| ||||||  || |||  |  |||| ||||||||   || ||||||||  |||      
T  101489 gatctcttgttgaggaagaggctactacatctagagggggaaggtagccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttaa 101393  T
Q  129 aatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttg 224  Q
    ||||||| |||| ||||||||||||||||| || ||||| || || ||||| | ||||| |||||| |||||||| |||||||||| |||||||||    
T  101392 aatttttgtggctttcctacttagttgatgtcgtaaaatcaagttggggaacggccatgctgagcagctaacattggcattgcgaggatcgttttg 101297  T

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Target: scaffold0006; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 234
Target Start/End: Complemental strand, 164976 - 164866
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgtttt 223  Q
    |||| ||||||| | || |||||||||||||||||||| ||||| || || ||||||||||||| ||||||||||||||| | |   |||| ||||||||    
T  164976 tttgtaatttttgtagctttcctacttagttgatgacgtaaaatcaagttggggaatgaccatgctgagcacctaacattgggacgacgaggatcgtttt 164877  T
Q  224 gaagctgattt 234  Q
    ||||| |||||    
T  164876 gaagccgattt 164866  T

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Target: scaffold0006; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 51776 - 51804
Alignment:
Q  5 agattctacttcatgcaacattgggatct 33  Q
    |||||||||||||||||||||||||||||    
T  51776 agattctacttcatgcaacattgggatct 51804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 136170 - 136198
Alignment:
Q  5 agattctacttcatgcaacattgggatct 33  Q
    |||||||||||||||||||||||||||||    
T  136170 agattctacttcatgcaacattgggatct 136198  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 21811156 - 21810964
Alignment:
Q  29 gatctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgc 128  Q
    |||||||||||||||| | |||||||||||||| |||| ||||||| ||||||  || |||  |  |||| ||||||||   || ||||||||  |||||    
T  21811156 gatctcttgttgaggaagcggctactacatctagaggaggaaggtagccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttgc 21811060  T
Q  129 aatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttg 224  Q
    ||||||| |||| ||||||||||||||||| || ||||| || || ||||| | ||||| |||||| |||||||| |||||||||| |||||||||    
T  21811059 aatttttgtggctttcctacttagttgatgtcgtaaaatcaagttggggaacggccatgctgagcagctaacattggcattgcgaggatcgttttg 21810964  T

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Target: scaffold0069 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 23352 - 23157
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||||||||||||||||||||||| |||  ||| ||||||||||  || |||  |  |||| ||||||||   || ||||||||  ||||||    
T  23352 atctcttgttgaggaggaggctactacatctagagggggaaagtaaccaacttgatcaaaaatcccttttccttgaac---ttgaacaacatcttttgca 23256  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    |||||| |||| |||||||||||||||||||| ||||| || || |||||  || ||| ||||||||| ||||| |||    ||| |||||||||||||    
T  23255 atttttgtggctttcctacttagttgatgacgtaaaatcaagttggggaacaacaatgttgagcacctgacattggcacgaagaggatcgttttgaagc 23157  T

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Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 38060950 - 38061145
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||||||||||||||||||||||||||||||| |||  ||||||||||||||  || |||  |  |||| || |||||   || ||||||||  |||| |    
T  38060950 atctcttgttgaggaggaggctactacatctagagggggaaggtaaccaacttgatcaaaaatcccttttccgtgaac---ttgaacaacatcttttgta 38061046  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttgaagc 228  Q
    ||||||||||| |||||||  ||||||||||| ||||| || || ||||| | ||||| ||||||||| ||||| |||   |||| |||||||||||||    
T  38061047 atttttctggctttcctaccaagttgatgacgtaaaatcaagttggggaacggccatgctgagcaccttacattggcacgacgaggatcgttttgaagc 38061145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 11509 - 11611
Alignment:
Q  126 tgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatttgcattgcgagaatcgttttga 225  Q
    |||||||||| |||| |||||||| ||||||||||| ||||| || || ||||| ||||||| ||||||||||||||| |||  ||||| ||||||||||    
T  11509 tgcaatttttgtggctttcctactaagttgatgacgtaaaatcaagttggggaacgaccatgctgagcacctaacattggcacggcgaggatcgttttga 11608  T
Q  226 agc 228  Q
    |||    
T  11609 agc 11611  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 20817970 - 20818140
Alignment:
Q  30 atctcttgttgaggaggaggctactacatctaaaggaagaaggtaaccaactgaattaaacttttctttcccttgaacaacttcaacaacattatttgca 129  Q
    |||| ||||||||||||||||||||| ||||| |||  ||||||||||||||  || |||  || || | ||||||||   || || |||||  ||||||    
T  20817970 atctattgttgaggaggaggctactatatctagagggggaaggtaaccaacttgataaaaaattcctctaccttgaac---ttgaagaacatcttttgca 20818066  T
Q  130 atttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatt 203  Q
    |||||| |||| |||||||||| ||||||||| ||||  || || ||||| ||| ||| |||||||||||||||    
T  20818067 atttttgtggctttcctacttaattgatgacgtaaaaccaagttagggaacgacgatgctgagcacctaacatt 20818140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 44444 - 44523
Alignment:
Q  124 tttgcaatttttctggcattcctacttagttgatgacgcaaaattaaatttgggaatgaccatggtgagcacctaacatt 203  Q
    |||||||||||| |||| |||||||||| ||||||||| ||||  || || ||||| ||| ||| |||||||||||||||    
T  44444 tttgcaatttttgtggctttcctacttaattgatgacgtaaaaccaagttggggaacgacgatgctgagcacctaacatt 44523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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