View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_high_29 (Length: 220)

Name: NF9026_high_29
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_high_29
NF9026_high_29
[»] chr5 (1 HSPs)
chr5 (1-220)||(31692773-31692992)
[»] chr2 (2 HSPs)
chr2 (56-167)||(600540-600650)
chr2 (77-124)||(24101661-24101708)
[»] chr8 (1 HSPs)
chr8 (86-170)||(33027850-33027934)
[»] chr3 (1 HSPs)
chr3 (56-148)||(548332-548423)
[»] chr1 (3 HSPs)
chr1 (56-167)||(2427203-2427314)
chr1 (57-114)||(50549406-50549463)
chr1 (133-169)||(25515711-25515747)
[»] scaffold0727 (1 HSPs)
scaffold0727 (77-170)||(4810-4903)
[»] chr4 (3 HSPs)
chr4 (77-170)||(23552689-23552782)
chr4 (66-170)||(14781126-14781228)
chr4 (56-107)||(51811767-51811818)
[»] scaffold0005 (1 HSPs)
scaffold0005 (66-170)||(58502-58604)
[»] chr6 (1 HSPs)
chr6 (66-109)||(3064834-3064877)
[»] scaffold1063 (1 HSPs)
scaffold1063 (171-203)||(30-62)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 31692992 - 31692773
Alignment:
Q  1 gtgttaataggtttccatgaatgtcttacccatatgacaaaaaggaaaggtgctggagatataaattagtcatctagttactagttagttagtgcctata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31692992 gtgttaataggtttccatgaatgtcttacccatatgacaaaaaggaaaggtgctggagatataagttagtcatctagttactagttagttagtgcctata 31692893  T
Q  101 aataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaaagttacaagttttctctctactttttcatg 200  Q
    |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31692892 aataggtttgaggtagttaaattgtaaccaactttctcatttgcaatactactcattactatcaatacaaagttacaagttttctctctactttttcatg 31692793  T
Q  201 gattccatgtttcatatcat 220  Q
    ||||||||||||||||||||    
T  31692792 gattccatgtttcatatcat 31692773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 167
Target Start/End: Complemental strand, 600650 - 600540
Alignment:
Q  56 gagatataaattagtcatctagttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactca 155  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||||||||| |||| || | |||| ||| |||||| ||| |||||||| || |||    
T  600650 gagatatatgttagtcatatagttactagttagttagtgcctataaataggcttaaggt-gtcacattgtaactaactttgtcaattgtaataatattca 600552  T
Q  156 ttactatcaata 167  Q
    || | |||||||    
T  600551 tttccatcaata 600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 24101708 - 24101661
Alignment:
Q  77 gttactagttagttagtgcctataaataggcttgaggtagttaaattg 124  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24101708 gttactagttagttagtgcctataaataggcttgaggtagtcaaattg 24101661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 33027934 - 33027850
Alignment:
Q  86 tagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 170  Q
    |||||||||| |||| ||||||||||||||||||||||| ||| ||||| ||||||||||  | |||||||||  ||||||||||    
T  33027934 tagttagtgcttatagataggcttgaggtagttaaattgtaactaacttcctcatttgtacaattactcattatcatcaatacaa 33027850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 548332 - 548423
Alignment:
Q  56 gagatataaattagtcatctagttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaata 148  Q
    ||||||||  |||||||| || |||||||||||||||||||||||||||||||| ||||| | | || | ||| |||||||||||||||||||    
T  548332 gagatatatgttagtcatataattactagttagttagtgcctataaataggcttaaggta-tcacatagtaactaactttctcatttgtaata 548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 167
Target Start/End: Original strand, 2427203 - 2427314
Alignment:
Q  56 gagatataaattagtcatctagttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaac-tttctcatttgtaatactactc 154  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||| || | |||| ||||||| |||| || |||||||| || ||    
T  2427203 gagatatatatcagtcatatagttactagttagttagtgcctataaataggcttaaggt-gtcacattgtaaccaacttttcccaattgtaataatattc 2427301  T
Q  155 attactatcaata 167  Q
    ||| | |||||||    
T  2427302 atttccatcaata 2427314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 50549463 - 50549406
Alignment:
Q  57 agatataaattagtcatctagttactagttagttagtgcctataaataggcttgaggt 114  Q
    |||||||  ||||||||||||||| ||||||| ||||| ||||||||| | |||||||    
T  50549463 agatataggttagtcatctagttagtagttagctagtgtctataaataagtttgaggt 50549406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 25515711 - 25515747
Alignment:
Q  133 tttctcatttgtaatactactcattactatcaataca 169  Q
    |||||||||||||||||||||||||  ||||||||||    
T  25515711 tttctcatttgtaatactactcattcttatcaataca 25515747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 4903 - 4810
Alignment:
Q  77 gttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 170  Q
    ||||||||||||||| || |||||||||| |||||| ||||||||||| ||| |||||  |||||| |||||| |||||||   ||||||||||    
T  4903 gttactagttagttaatgtctataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaa 4810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 23552782 - 23552689
Alignment:
Q  77 gttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaatacaa 170  Q
    ||||||||||||||| || |||||||||| |||||| ||||||||||| ||| |||||  |||||| |||||| |||||||   ||||||||||    
T  23552782 gttactagttagttaatgtctataaatagacttgagttagttaaattgtaactaacttcttcatttataataccactcattctcatcaatacaa 23552689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 14781228 - 14781126
Alignment:
Q  66 ttagtcatctagttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaa 165  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| |||| |  | |||| ||| ||||||||| ||||||||| || |||||  ||||||    
T  14781228 ttagtcacctagttactagttagttagtg-ctataaataggcttaaggt-gccacattgtaactaactttctcttttgtaataatattcatttttatcaa 14781131  T
Q  166 tacaa 170  Q
     ||||    
T  14781130 cacaa 14781126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 51811767 - 51811818
Alignment:
Q  56 gagatataaattagtcatctagttactagttagttagtgcctataaataggc 107  Q
    ||||||||  || ||||| || ||||||||||||||||||||||||||||||    
T  51811767 gagatatacgttggtcatatacttactagttagttagtgcctataaataggc 51811818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 58502 - 58604
Alignment:
Q  66 ttagtcatctagttactagttagttagtgcctataaataggcttgaggtagttaaattggaaccaactttctcatttgtaatactactcattactatcaa 165  Q
    ||||||| ||||||||||||||||||||| |||||||||||||| |||| |  | |||| ||| ||||||||| ||||||||| || |||||  ||||||    
T  58502 ttagtcacctagttactagttagttagtg-ctataaataggcttaaggt-gccacattgtaactaactttctcttttgtaataatattcatttttatcaa 58599  T
Q  166 tacaa 170  Q
     ||||    
T  58600 cacaa 58604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 3064877 - 3064834
Alignment:
Q  66 ttagtcatctagttactagttagttagtgcctataaataggctt 109  Q
    |||||||| |||||||||||||||||||| ||||||||||||||    
T  3064877 ttagtcatatagttactagttagttagtggctataaataggctt 3064834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 62 - 30
Alignment:
Q  171 agttacaagttttctctctactttttcatggat 203  Q
    |||||||||||||||||||||||||||||||||    
T  62 agttacaagttttctctctactttttcatggat 30  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University