View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_high_3 (Length: 601)
Name: NF9026_high_3
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 31605635 - 31605070
Alignment:
| Q |
1 |
agagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605635 |
agagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccat |
31605536 |
T |
|
| Q |
101 |
aatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605535 |
aatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatactttcggtatttttaatgttattaggctgctcgttatttagt |
31605436 |
T |
|
| Q |
201 |
gaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaa |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31605435 |
gaggttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaa |
31605336 |
T |
|
| Q |
301 |
caatggtgtcaacaatatttttgccactgtactttctttatagtggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtacaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
31605335 |
caatggtgtcaacaatatttttgccattgtactttctttatagtggtgctagtttcaaatttttcgtaattgatgctcgtacctttgcaattgtacaagt |
31605236 |
T |
|
| Q |
401 |
tgttgctgtagttgcatatttggggaaggttggtggtactatgttgccttcaatttattggaagatgccagttaatgatgttctatttttaggactactt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31605235 |
tgttgctgtagttgcatatttggggaaggttggtggtactatgttgccttcaatttattcgaagatgccagttaatgatgttctatttttaggactactt |
31605136 |
T |
|
| Q |
501 |
atgagtgctcaaggcatcacacaagtactttacttgcagacttctttcaacctttatgtaagattc |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31605135 |
atgagtgctcaaggcatcacacaagtactttacttgcagacttctttcaacctttatgtaagattc |
31605070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 44 - 545
Target Start/End: Complemental strand, 31595828 - 31595327
Alignment:
| Q |
44 |
gatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaatt |
143 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||||| ||| |||| |
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| T |
31595828 |
gatgacaatttgtttgctagctatgattgccttcacaatatgtgttctacgtcccataatgttgtggatggtaagacaaacacccgaagggcaaccaatt |
31595729 |
T |
|
| Q |
144 |
aaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttg |
243 |
Q |
| |
|
|||||||| ||| || |||||||| ||||||||||||| || ||||| ||||||| || ||||||||||||||||||| |||||| ||||||||| ||| |
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|
| T |
31595728 |
aaagaatcatacgtactttcggtaattttaatgttattggggtgctcattatttatggaggttattggagaacattttacgcttgggcctgtaattcttg |
31595629 |
T |
|
| Q |
244 |
gcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattggaaacaatggtgtcaacaatatttttgccactgtactttctttatag |
343 |
Q |
| |
|
|| ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | | |
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| T |
31595628 |
gcttggctgtacctgacgggcctccattaggatcagcattgactgaaagattggaaacaatggtgtcaaaaatatttttgccattgtactttcttttttg |
31595529 |
T |
|
| Q |
344 |
tggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtacaagttgttgctgtagttgcatatttggggaaggttggtggtactatg |
443 |
Q |
| |
|
|||||| ||||||||| | || |||||||| ||||| ||||| || ||| ||| || |||||||| |||||| |||||| |||||||||||||||||| |
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| T |
31595528 |
tggtgcaagtttcaaattgtttttaattgattctcgttgctttgtaactgtgcaaattattgctgtatttgcatttttgggaaaggttggtggtactatg |
31595429 |
T |
|
| Q |
444 |
ttgccttcaatttattggaagatgccagttaatgatgttctatttttaggactacttatgagtgctcaaggcatcacacaagtactttacttgcagactt |
543 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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|
| T |
31595428 |
ctgccttcaatttatttgaagatgccacttactgatgttctatctttaggactactcatgagttgtcaaggcatcacacaattactttacttgcagactt |
31595329 |
T |
|
| Q |
544 |
ct |
545 |
Q |
| |
|
|| |
|
|
| T |
31595328 |
ct |
31595327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 99 - 542
Target Start/End: Complemental strand, 31579911 - 31579468
Alignment:
| Q |
99 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
198 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||| ||| |||||||| ||||||||||| || ||||||||| |||| |||||||| ||||||| |
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|
| T |
31579911 |
ataatgttttggatgataagaaaaacacctgaaggaaaaccaatcaaagaatcatacatattttcagtgtttttaatgatattgggctgctcattattta |
31579812 |
T |
|
| Q |
199 |
gtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggaccgccattaggatcagcattgactgaaagattgga |
298 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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|
| T |
31579811 |
gtgaggttattggagaacattatatgattggtcctgtaattttaggtctggctgtacctgatgggcctccattaggatcagcattgactgaaaggttgga |
31579712 |
T |
|
| Q |
299 |
aacaatggtgtcaacaatatttttgccactgtactttctttatagtggtgctagtttcaaaattttcataattgatgctcgtacctttgcaattgtacaa |
398 |
Q |
| |
|
|||| |||||| | | || |||||| |||| || |||| || |||||||| |||||| ||||| ||||| || |||||| ||||| ||| || ||| |
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|
| T |
31579711 |
tgcaattgtgtcagcggttttcttgccattgtatttcctttttaatggtgctaatttcaatatttttctaattaatactcgtagctttgtaatagtgcaa |
31579612 |
T |
|
| Q |
399 |
gttgttgctgtagttgcatatttggggaaggttggtggtactatgttgccttcaatttattggaagatgccagttaatgatgttctatttttaggactac |
498 |
Q |
| |
|
|||||||| || |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
31579611 |
attgttgctatatttgcatctttggggaaggttgctggaactatgttgccttcaatttattggaagatgccagttactgatgttctatctttaggactac |
31579512 |
T |
|
| Q |
499 |
ttatgagtgctcaaggcatcacacaagtactttacttgcagact |
542 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
31579511 |
ttatgagtgctcaaggcatcacacaattgatttacttgcagact |
31579468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 65 - 542
Target Start/End: Complemental strand, 31564411 - 31563931
Alignment:
| Q |
65 |
tatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcg |
164 |
Q |
| |
|
|||| ||| ||||| |||||||||| | | ||||||||| |||||||| ||||| ||||||||||||| |||| ||| |||||||| |||||| | || |
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|
| T |
31564411 |
tatggttgttttcataatatgtgttcttagacccataatgctttggatggtaagaaaaacaccagaaggaaaaccaatcaaagaatcatacataatgtct |
31564312 |
T |
|
| Q |
165 |
gtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatttttggcatggctgtacctgatggac |
264 |
Q |
| |
|
|| |||||||||||| | |||||| | || ||||||| | || |||||||||| | | | || |||| ||||| || ||||||||||||||||||| |
|
|
| T |
31564311 |
gtgtttttaatgttactcggctgcgcatttgttagtgagttaatcggagaacattatttagtcgggactgttattttcggtatggctgtacctgatggac |
31564212 |
T |
|
| Q |
265 |
cgccattaggatcagcattgactgaaagattggaaacaatggtgtcaacaatatttttgccactgtactttctttatagtggtgctagtttcaaaatttt |
364 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |||||||| || || | | |||||| |||| |||||||||| | | || |||||| | || |
|
|
| T |
31564211 |
ctccattaggatcagcattgactgatagattggatacaatggtatcggcattttacttgccattgtattttctttatatggctaataaattcaaattgtt |
31564112 |
T |
|
| Q |
365 |
cataattgatgctcgtacctttgcaattgtacaagttgttgctgtagttgcatatttggggaaggttggtggtactatg---ttgccttcaatttattgg |
461 |
Q |
| |
|
||||||| ||||||| |||| ||| ||||||| | ||||| || ||||| |||||||||| ||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
31564111 |
tctaattgacgctcgtagctttttaatagtacaagctattgctataattgcaactttggggaagattgctggaactatgatgttgccttcaattttttgg |
31564012 |
T |
|
| Q |
462 |
aagatgccagttaatgatgttctatttttaggactacttatgagtgctcaaggcatcacacaagtactttacttgcagact |
542 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||| | || | |||||| | |||||||||||||| |
|
|
| T |
31564011 |
aagatgccagttagtgatgttctatctttaggactacttatgagtgctaatggacttacacaattcatttacttgcagact |
31563931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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