View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_high_31 (Length: 203)
Name: NF9026_high_31
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 3324670 - 3324816
Alignment:
| Q |
11 |
gaacctgtgatatgttcttgccaagagtgttgatggccatgctacaacttcctaatccaatcaaaagcgatctccaggaaatttctaagatccgtgaagc |
110 |
Q |
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| T |
3324670 |
gaacctgtgatatgttcttgccaagagtgttgatggccatgctgcaacttcctaatccaatcaaaagcgatctccaggaaatttctaagattcgtgatgc |
3324769 |
T |
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| Q |
111 |
atgtgatattgtttccaacttggtaaaacttacatcatatagatcat |
157 |
Q |
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| T |
3324770 |
atgtgatattgtttcgaacttggtaaaacttacatcatatagatcat |
3324816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 3262300 - 3262380
Alignment:
| Q |
11 |
gaacctgtgatatgttcttgccaagagtgttgatggccatgctacaacttcctaatccaatcaaaagcgatctccaggaaa |
91 |
Q |
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| T |
3262300 |
gaacctgtgatatgctctttccaagagttttgatgactacgtggcaacttcctattctaatcaatagcgatctcgaggaaa |
3262380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 12598803 - 12598838
Alignment:
| Q |
10 |
agaacctgtgatatgttcttgccaagagtgttgatg |
45 |
Q |
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| T |
12598803 |
agaacctgtgatatgttcttgccaagagtgtcgatg |
12598838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 20812710 - 20812662
Alignment:
| Q |
109 |
gcatgtgatattgtttccaacttggtaaaacttacatcatatagatcat |
157 |
Q |
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| T |
20812710 |
gcatgtgatgttgtttccaactcagtaaaattcacatcatatagatcat |
20812662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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