View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_high_4 (Length: 595)
Name: NF9026_high_4
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 30731037 - 30730612
Alignment:
| Q |
13 |
gacatcatatctctagaagaatttttatttagataattcttagtttcaaccattcatagagtgcatataatttttctaaaaacactaatt---------- |
102 |
Q |
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| T |
30731037 |
gacatcatatctttagaagaatttttatttagataattcttaatttcaaccattcatagagtgcatataatttttctaaaaacacttattaaaaacacta |
30730938 |
T |
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| Q |
103 |
---tacataagcataaattaaacactagacccgtgcaaaataatcttaagacggatttagttctaactgaattagttagatgtttaaactataattacct |
199 |
Q |
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| T |
30730937 |
acttacataagtataaattacacactagacccgtgcaaaataatcttaagacggatttagttctaactgaattagttagatgtttaaactataattacct |
30730838 |
T |
|
| Q |
200 |
tccacaatgtaataattcatttgagttgaatgaattggaaaatgctccattctcatcagaattctctctccgattgttcatgatgttaatagtttcaata |
299 |
Q |
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| T |
30730837 |
tccacaatgtaataattcatttgagttgaatgaattggaaaatgctccattctcatcagaattctctctccgattgttcatgatgttaatagtttcaata |
30730738 |
T |
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| Q |
300 |
gttttcatttgagttaaatgcattttcagcaaagttttttaatatattatttacttcttcacaggtcaatgaccttgactccaagtatatacaaacccat |
399 |
Q |
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| T |
30730737 |
gttttcatttgagttaaatgcattttcagcagagttttttaatatataatttacttcttcacaggtcaatgaccttgactccaagtatatacaaacccat |
30730638 |
T |
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| Q |
400 |
ttcatttttcattattatttgtctat |
425 |
Q |
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| T |
30730637 |
ttcatttttcattattatttgtctat |
30730612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 456 - 587
Target Start/End: Complemental strand, 30730593 - 30730461
Alignment:
| Q |
456 |
ttgtatattctcttttcattatactannnnnnnn-caaccatgcatatttatttcatttttcttgccgtttagatatacaactcgctgtacttatctctt |
554 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30730593 |
ttgtatattctcttttcattatactatttttttttcaaccatgcatattgatttcatttttcttgccgtttagatatacaaatcgctgtacttatctctt |
30730494 |
T |
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| Q |
555 |
cgaaatataccttttagcatgattatgatgatg |
587 |
Q |
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| T |
30730493 |
cgaaatataccttttagcatgattatgatgatg |
30730461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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