View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_14 (Length: 590)
Name: NF9026_low_14
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Complemental strand, 41857145 - 41856572
Alignment:
| Q |
1 |
aatccaattgaaaatattctgtatcttttgaattcctagagaaattaaagttccaacaattaccatctagtactatgaaaattgaagatgagatcatgag |
100 |
Q |
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| T |
41857145 |
aatccaattgaaaatattctgtatcttttgaattcctagagaaattaaagttccaacaattaacatctagtactatgaaaattgaagatgagatcatgag |
41857046 |
T |
|
| Q |
101 |
agactgatactgggagaaagacaaaataatcaaggtttcgcctccatgaatattaaattccttgtgcaccccaacctaagatttacctagaacccaagtg |
200 |
Q |
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| T |
41857045 |
agactgatactgggagaaagacaaaataatcaaggtttcgcctccatgaatattaaattccttgtgcaccccaacctaagatttacctagaacccaagtg |
41856946 |
T |
|
| Q |
201 |
tctaacctgataatgatta-ttacctagattcccgcgcttagtcacttagctaaaccatacttgttaacccatttattcagcaat--tatatgactttca |
297 |
Q |
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| T |
41856945 |
tctaacctgataatgattacttacctagattcccattcttagtcacttagctaaaccatacttgttaacccatttattcagcaattatatatgactttca |
41856846 |
T |
|
| Q |
298 |
atgcaactgtgtgtgatctctttcaaaaacatgtatttttgtggtctctatcttagcaagtgtaaaatgtgatcacttttgctattactggctgaaaaga |
397 |
Q |
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| T |
41856845 |
atgcaattgtgtgtgatctctttcaaaaacatgtatttctgtggtctctatcttagcaagtgtaaaatgtgatcacttttgctattactggctgaaaaga |
41856746 |
T |
|
| Q |
398 |
aattttctaatgttctatgtggtgatttgggtgtatttcatgagtcaaatattgttcattgttaaattcataacttnnnnnnnnnnnnnntttaggaaat |
497 |
Q |
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| T |
41856745 |
aattttctaatgttcattgtgatgatttgtgtgtatttcatgagtcagatattgtacattgtaaaatacatagctt-----tcacccccttttaggaaat |
41856651 |
T |
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| Q |
498 |
aaaaagaaagaatcaacttgctattcatattattggcatcccttatatggacttctgatgtttgtttgagtggtatgtg |
576 |
Q |
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| T |
41856650 |
aaaaagaaagaatcaacttgctattcatattattggcatcccttatatagacttctgatgtttgtttgagtggtatgtg |
41856572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 241 - 361
Target Start/End: Original strand, 12789573 - 12789691
Alignment:
| Q |
241 |
gtcacttagctaaaccatacttgttaacccatttattcagcaat--tatatgactttcaatgcaactgtgtgtgatctctttcaaaaacatgtatttttg |
338 |
Q |
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||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||| |||||| | ||||||||||| || |
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| T |
12789573 |
gtcacctagcaaaaccatacttgttaacccatttattcaacaattatatatgactttc-atgcaa--ttgtgtgatatctttc-agaacatgtatttctg |
12789668 |
T |
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| Q |
339 |
tggtctctatcttagcaagtgta |
361 |
Q |
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|||||| |||||||||||||||| |
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| T |
12789669 |
tggtctatatcttagcaagtgta |
12789691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 542
Target Start/End: Original strand, 12778926 - 12778964
Alignment:
| Q |
504 |
aaagaatcaacttgctattcatattattggcatccctta |
542 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |
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| T |
12778926 |
aaagaatcaactagctagtcatattattggcatccctta |
12778964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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