View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_low_18 (Length: 554)

Name: NF9026_low_18
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_low_18
NF9026_low_18
[»] chr7 (11 HSPs)
chr7 (371-538)||(18794345-18794512)
chr7 (2-220)||(18791827-18792051)
chr7 (270-363)||(18792092-18792185)
chr7 (126-209)||(27866840-27866923)
chr7 (131-217)||(27542999-27543085)
chr7 (270-319)||(27543529-27543578)
chr7 (102-174)||(21166376-21166448)
chr7 (96-186)||(47317776-47317867)
chr7 (133-220)||(27543674-27543761)
chr7 (118-177)||(3614401-3614460)
chr7 (99-175)||(3615322-3615399)
[»] chr2 (8 HSPs)
chr2 (99-209)||(4425878-4425989)
chr2 (134-204)||(41474696-41474764)
chr2 (98-176)||(20897431-20897510)
chr2 (129-171)||(11089567-11089609)
chr2 (123-177)||(25297276-25297330)
chr2 (129-175)||(34456966-34457012)
chr2 (165-210)||(4424882-4424927)
chr2 (128-180)||(25192683-25192735)
[»] chr3 (11 HSPs)
chr3 (98-187)||(44846955-44847045)
chr3 (96-220)||(44006392-44006517)
chr3 (134-209)||(42989839-42989914)
chr3 (123-177)||(14336925-14336979)
chr3 (134-177)||(38108808-38108851)
chr3 (97-182)||(42993462-42993548)
chr3 (102-177)||(21808980-21809056)
chr3 (123-174)||(4950857-4950908)
chr3 (138-177)||(44810661-44810700)
chr3 (44-80)||(15672462-15672498)
chr3 (97-144)||(47642791-47642839)
[»] chr5 (8 HSPs)
chr5 (102-177)||(12075866-12075942)
chr5 (95-204)||(16291259-16291369)
chr5 (125-177)||(16514173-16514225)
chr5 (103-177)||(9042441-9042515)
chr5 (167-209)||(42857376-42857418)
chr5 (123-176)||(30511870-30511923)
chr5 (123-176)||(30552210-30552263)
chr5 (125-182)||(34458021-34458078)
[»] chr4 (16 HSPs)
chr4 (99-220)||(40729865-40729987)
chr4 (134-209)||(43036440-43036515)
chr4 (123-177)||(25411668-25411722)
chr4 (269-319)||(47110579-47110629)
chr4 (123-175)||(40339453-40339505)
chr4 (96-177)||(15502811-15502893)
chr4 (120-157)||(43955876-43955913)
chr4 (127-204)||(50825947-50826024)
chr4 (129-177)||(32894992-32895040)
chr4 (99-177)||(9981107-9981186)
chr4 (124-174)||(54734421-54734471)
chr4 (120-177)||(46701986-46702043)
chr4 (324-353)||(47110558-47110587)
chr4 (114-178)||(32430500-32430564)
chr4 (134-182)||(36505761-36505809)
chr4 (108-172)||(52678378-52678442)
[»] chr8 (7 HSPs)
chr8 (134-210)||(32473112-32473188)
chr8 (123-178)||(24689789-24689845)
chr8 (99-177)||(6253302-6253381)
chr8 (123-175)||(603738-603790)
chr8 (102-177)||(11459730-11459805)
chr8 (136-188)||(32472429-32472481)
chr8 (134-182)||(44374027-44374075)
[»] scaffold0146 (2 HSPs)
scaffold0146 (134-204)||(32300-32370)
scaffold0146 (136-204)||(29958-30026)
[»] chr1 (7 HSPs)
chr1 (120-178)||(34123565-34123623)
chr1 (163-210)||(21761342-21761389)
chr1 (134-209)||(37770230-37770305)
chr1 (125-176)||(42486395-42486446)
chr1 (99-144)||(35574467-35574512)
chr1 (97-176)||(33216332-33216412)
chr1 (98-177)||(42805866-42805946)
[»] chr6 (5 HSPs)
chr6 (102-172)||(6979019-6979090)
chr6 (123-177)||(2584511-2584564)
chr6 (137-180)||(5613834-5613877)
chr6 (123-177)||(12120194-12120247)
chr6 (123-155)||(26221213-26221245)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 371 - 538
Target Start/End: Original strand, 18794345 - 18794512
Alignment:
Q  371 atgaatttgaaaaatatttgtatatgataattcaattaacatttgtgtagtggttcataaaaaacaagttgtgcagtgatagtttcactattttagaaat 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18794345 atgaatttgaaaaatatttgtatatgataattcaattaacatttgtgtagtggttcataaaaaacaagttgtgcagtgatagtttcactattttagaaat 18794444  T
Q  471 aaatttcaagagtaatatactggtaggtgtataatgtgctcatcccgataaactccagtggtattaac 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  18794445 aaatttcaagagtaatatactggtaggtgtataatgtgctcatcccgatttactccagtagtattaac 18794512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 18791827 - 18792051
Alignment:
Q  2 acttaataagttcaatggaccaaatcaagtcttttatccaatccccacccc-----aagcttgatttgtcattctttaacctgcaagctgccaaatcttt 96  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||| ||||     |||||||||||||||||||||||||||| |||||||||||||||    
T  18791827 acttaataagtccaatggaccaaatcaagtctattatccaatccccccccccccccaagcttgatttgtcattctttaacctgcgagctgccaaatcttt 18791926  T
Q  97 ttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaaca 195  Q
    |||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||    
T  18791927 ttgaaaattgtttttttgacattgaatacttcctaaaaacacaagtaaaatacttaaataccatcaacagtagttaactaccattgaagacccgacagca 18792026  T
Q  196 gttaactactgctggaaaattgctt 220  Q
    ||||||||| |||| ||||||||||    
T  18792027 gttaactaccgctgaaaaattgctt 18792051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 18792092 - 18792185
Alignment:
Q  270 tttcaactgctgcaccacatatatccagatggaattaggtgatcaaattgtataatcaaattgcatcacactttggtcaaattgcaagcacaca 363  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  18792092 tttcaactgctgcaccacatatatccagatggaatccggtgatcaaattgtataatcaaattgcatcacaatttggtcatattgcaagcacaca 18792185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 27866840 - 27866923
Alignment:
Q  126 tcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctg 209  Q
    |||||||||||||||||||||| |||||| || ||| ||||||||||||||| |||| |||||| || ||||||||||| ||||    
T  27866840 tcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaagacccggcagcagttaactaccgctg 27866923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 27542999 - 27543085
Alignment:
Q  131 aaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctggaaaattg 217  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||||| || | || ||| || ||||||||||| ||||||||||||    
T  27542999 aaaacacaagtaaaatacttaaatgcctccaatggtagttaactaccgttcaagaaccgtcagcagttaactaccgctggaaaattg 27543085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 27543578 - 27543529
Alignment:
Q  270 tttcaactgctgcaccacatatatccagatggaattaggtgatcaaattg 319  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  27543578 tttcaactgctgcaccacatatatccagatggaatccggtgatcaaattg 27543529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 174
Target Start/End: Original strand, 21166376 - 21166448
Alignment:
Q  102 aattgcttttctacattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaact 174  Q
    ||||||||||||   || |||||||||||||||||||||||||||||| |||||||  || ||||||||||||    
T  21166376 aattgcttttctgacttcaatacttcctaaaaacacaagtaaaatactaaaatacccccagcggtagttaact 21166448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Complemental strand, 47317867 - 47317776
Alignment:
Q  96 tttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggac 186  Q
    |||||||||||||||||| |||||||| ||||   ||  ||||||||||||||||||||| ||  || ||||||||||||||| ||||||||    
T  47317867 tttgaaaattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggac 47317776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 220
Target Start/End: Complemental strand, 27543761 - 27543674
Alignment:
Q  133 aacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctggaaaattgctt 220  Q
    ||||||||||||||| | ||||| || |  ||||||||||||||  ||||||| ||| || ||||||||||| |||| ||||||||||    
T  27543761 aacacaagtaaaatattgaaatatctcccgcggtagttaactactgttgaggatccggcagcagttaactaccgctgaaaaattgctt 27543674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 3614401 - 3614460
Alignment:
Q  118 tgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||||||  |||||||||||||||| ||||| ||  || |||||||||||||||    
T  3614401 tgaatacttcctattaacacaagtaaaatacgtaaatgcccccagcggtagttaactacc 3614460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 3615399 - 3615322
Alignment:
Q  99 gaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaacta 175  Q
    ||||||||||||| | ||| |||||||||||||   |||||| |||||||| ||||| ||  ||||||||||||||||    
T  3615399 gaaaattgcttttttgacaatgaatacttcctattgacacaaataaaatacgtaaatgcccccaacggtagttaacta 3615322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 4425878 - 4425989
Alignment:
Q  99 gaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagt 197  Q
    |||| |||||||||| |||||||| |||||  || |||||||||||||||||||||| ||  |||| ||| ||||||||| |||||||||||||||||||    
T  4425878 gaaagttgcttttctgacattgaaaacttcacaataacacaagtaaaatacttaaatgcccccaacagtacttaactaccgttgaggacccgacaacagt 4425977  T
Q  198 taactactgctg 209  Q
    ||||||| ||||    
T  4425978 taactaccgctg 4425989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 41474764 - 41474696
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactac 204  Q
    |||||||||||||||||||||| ||||| | ||||||||||||| |||| |||||| ||||||||||||||    
T  41474764 acacaagtaaaatacttaaata-cttcagcagtagttaactaccgttgatgacccg-caacagttaactac 41474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 20897510 - 20897431
Alignment:
Q  98 tgaaaattgcttttcta-cattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactac 176  Q
    ||||||||| ||||||| |||  || ||||| |||||||||| |||||||||||||||  ||||| ||||||| ||||||    
T  20897510 tgaaaattgtttttctaacatcaaaaacttcataaaaacacatgtaaaatacttaaatgtcttcagcggtagtaaactac 20897431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 11089609 - 11089567
Alignment:
Q  129 taaaaacacaagtaaaatacttaaataccttcaacggtagtta 171  Q
    |||||| |||||||||||||||||||||||||  |||||||||    
T  11089609 taaaaatacaagtaaaatacttaaataccttcggcggtagtta 11089567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 25297276 - 25297330
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||| ||||||||| ||||||  ||  |||||||||||||||    
T  25297276 acttcctaaaaacacaaataaaatactaaaatactctcggcggtagttaactacc 25297330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 34456966 - 34457012
Alignment:
Q  129 taaaaacacaagtaaaatacttaaataccttcaacggtagttaacta 175  Q
    |||| ||||||||||||||||||||| || ||| |||||||||||||    
T  34456966 taaagacacaagtaaaatacttaaatgccctcagcggtagttaacta 34457012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 4424927 - 4424882
Alignment:
Q  165 gtagttaactaccattgaggacccgacaacagttaactactgctgg 210  Q
    ||||||||||||| ||||||||||| || ||||||||||| |||||    
T  4424927 gtagttaactaccgttgaggacccggcatcagttaactaccgctgg 4424882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 25192683 - 25192735
Alignment:
Q  128 ctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccatt 180  Q
    ||||||||||| | |||||||| |||||  ||| |||||||||||||||||||    
T  25192683 ctaaaaacacatggaaaatactgaaatattttcgacggtagttaactaccatt 25192735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 44846955 - 44847045
Alignment:
Q  98 tgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacc 187  Q
    |||||||||||||||| |||||||| |||||  |  |||||||||||||||||||||||||| || ||||||||||||||| |||||||||    
T  44846955 tgaaaattgcttttctgacattgaaaacttcacattaacacaagtaaaatacttaaatacctccagcggtagttaactaccgttgaggacc 44847045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 44006392 - 44006517
Alignment:
Q  96 tttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaac 194  Q
    |||||||||||||||||| |||||||| | |||  ||  ||| ||||||||||||||||| ||  || ||||||||||||||| || |||| ||| || |    
T  44006392 tttgaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttcaggaaccggcagc 44006491  T
Q  195 agttaactactgctggaaaattgctt 220  Q
    |||||||||| |||| ||||||||||    
T  44006492 agttaactaccgctgaaaaattgctt 44006517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 42989839 - 42989914
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctg 209  Q
    |||||| ||||||| |||||||| |||| ||||||||||||||| |||||||| ||||  ||||||||||| ||||    
T  42989839 acacaactaaaatatttaaatactttcagcggtagttaactaccgttgaggactcgacggcagttaactacagctg 42989914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 14336925 - 14336979
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||| ||||||||| |||||| | ||||||||||||||||||    
T  14336925 acttcctaaaaacacaaataaaatactaaaatacttccaacggtagttaactacc 14336979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 38108808 - 38108851
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  38108808 acacaagtaaaatacttaaatacctccagcggtagttaactacc 38108851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 42993548 - 42993462
Alignment:
Q  97 ttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattga 182  Q
    |||||||||| |||||| | |||||| |||||  ||  |||||||||||||||||||||||||||| | ||| ||||||||| ||||    
T  42993548 ttgaaaattgtttttctgatattgaaaacttcacaatgacacaagtaaaatacttaaataccttcagcagtatttaactaccgttga 42993462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 21809056 - 21808980
Alignment:
Q  102 aattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||| | ||||| || |||||||||||||||||||||| |||  ||||||  ||| |||||||||||||||    
T  21809056 aattgcttttttgacatttaaaacttcctaaaaacacaagtaaagtacgaaaatactctcagcggtagttaactacc 21808980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 4950908 - 4950857
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaact 174  Q
    ||||| |||| ||||||||||||||||||||| || |||| |||||||||||    
T  4950908 acttcataaagacacaagtaaaatacttaaatgccctcaatggtagttaact 4950857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 44810700 - 44810661
Alignment:
Q  138 aagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  44810700 aagtaaaatacttaaatacctccagcggtagttaactacc 44810661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 15672462 - 15672498
Alignment:
Q  44 ccccaccccaagcttgatttgtcattctttaacctgc 80  Q
    |||| |||||| |||||||||||||||||||||||||    
T  15672462 cccccccccaaacttgatttgtcattctttaacctgc 15672498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 47642839 - 47642791
Alignment:
Q  97 ttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaa 144  Q
    ||||||||||||||||| |||| ||||||||||||  ||||||||||||    
T  47642839 ttgaaaattgcttttctgacatagaatacttcctattaacacaagtaaa 47642791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 12075866 - 12075942
Alignment:
Q  102 aattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  12075866 aattgcttttctgactttcaatacttcctaaaaacacaagtaaaatactaaaatacctccagcggtagttaactacc 12075942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 16291259 - 16291369
Alignment:
Q  95 ttttgaaaattgcttttcta-cattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaa 193  Q
    |||||||||||||||||||  |||||||  |||| |||  ||| |||||||||||||||||  ||| || ||||||||| |||| |||| || | |||||    
T  16291259 ttttgaaaattgcttttctgtcattgaaatcttcataatgacataagtaaaatacttaaatgtcttaaatggtagttaattaccgttgaagatctgacaa 16291358  T
Q  194 cagttaactac 204  Q
    |||||||||||    
T  16291359 cagttaactac 16291369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 16514173 - 16514225
Alignment:
Q  125 ttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||||||| ||| ||||| | |||||||||||||||    
T  16514173 ttcctaaaaacacaagtaaaatactaaaacacctttagcggtagttaactacc 16514225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 9042515 - 9042441
Alignment:
Q  103 attgcttttctacattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||  ||| ||||  |||||||  ||||||||||||||| |||||||||  || |||||||||||||||    
T  9042515 attgctttttgacaatgaaaccttcctattaacacaagtaaaatatttaaatacccccagcggtagttaactacc 9042441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 42857376 - 42857418
Alignment:
Q  167 agttaactaccattgaggacccgacaacagttaactactgctg 209  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  42857376 agttaactaccattgaggaaccgacaacaattaactaccgctg 42857418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 30511923 - 30511870
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactac 176  Q
    ||||||||||||||||||||||||| | ||||| ||  ||| ||||||||||||    
T  30511923 acttcctaaaaacacaagtaaaatattaaaatatctctaacagtagttaactac 30511870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 30552263 - 30552210
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactac 176  Q
    ||||||||||||||||||||||||| | ||||| ||  ||| ||||||||||||    
T  30552263 acttcctaaaaacacaagtaaaatattaaaatatctctaacagtagttaactac 30552210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 34458021 - 34458078
Alignment:
Q  125 ttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattga 182  Q
    ||||||| ||||||||||||||||||||||  ||  | ||||||||||||||| ||||    
T  34458021 ttcctaataacacaagtaaaatacttaaatggctctagcggtagttaactaccgttga 34458078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 40729987 - 40729865
Alignment:
Q  99 gaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagt 197  Q
    ||||||||||||||| |||||||| |||||  ||  ||||||||||||||||||||| ||  || ||||| ||||||||| || |||| ||| || ||||    
T  40729987 gaaaattgcttttctgacattgaaaacttcacaatgacacaagtaaaatacttaaatgccaccagcggtatttaactaccgttcaggaaccggcagcagt 40729888  T
Q  198 taactactgctggaaaattgctt 220  Q
    |||||||  ||||||||||||||    
T  40729887 taactaccactggaaaattgctt 40729865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 43036515 - 43036440
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctg 209  Q
    ||||||||||||||||||||| ||   | ||||||||||||||| ||||||||||| || ||||||||||| ||||    
T  43036515 acacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagcagttaactaccgctg 43036440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 25411722 - 25411668
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||| |||||||||||||||||||||| |||||||| || |||||||||||||||    
T  25411722 actttctaaaaacacaagtaaaatactaaaatacctccagcggtagttaactacc 25411668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 47110629 - 47110579
Alignment:
Q  269 atttcaactgctgcaccacatatatccagatggaattaggtgatcaaattg 319  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  47110629 atttcaactactgcaccacatatatccagatggaatccggtgatcaaattg 47110579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 40339453 - 40339505
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaacta 175  Q
    ||||||||||||||||||||||||||| | |||||| || |||||||||||||    
T  40339453 acttcctaaaaacacaagtaaaatactaacatacctccagcggtagttaacta 40339505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 15502893 - 15502811
Alignment:
Q  96 tttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||| |||||||||| | ||||| |||||||||||  ||||||||||||||||| |||||||   | |||||||||||||||    
T  15502893 tttgacaattgcttttttgacattcaatacttcctagtaacacaagtaaaatactaaaataccccaagcggtagttaactacc 15502811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 43955876 - 43955913
Alignment:
Q  120 aatacttcctaaaaacacaagtaaaatacttaaatacc 157  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43955876 aatacttcctaaaaacacaagtaaaatactaaaatacc 43955913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 50826024 - 50825947
Alignment:
Q  127 cctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactac 204  Q
    |||||||| |||||||||||||||||||  ||  | |||||||||||||| |||||||||| | ||  ||||||||||    
T  50826024 cctaaaaaaacaagtaaaatacttaaatgtctctaccggtagttaactactattgaggacctggcagaagttaactac 50825947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 32895040 - 32894992
Alignment:
Q  129 taaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  32895040 taaaaacacaagtaaaatactaaaatactcacaacggtagttaactacc 32894992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 9981107 - 9981186
Alignment:
Q  99 gaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||| | |||  ||||||||||||   ||||||||||||||| ||||| |||||| |||||||||| ||||    
T  9981107 gaaaattgcttttttgacaaggaatacttcctattgacacaagtaaaatacgtaaatgccttcagcggtagttaattacc 9981186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 54734471 - 54734421
Alignment:
Q  124 cttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaact 174  Q
    ||||||||||||||| |||||||||||||||  |  |||||||||||||||    
T  54734471 cttcctaaaaacacatgtaaaatacttaaatgtccgcaacggtagttaact 54734421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 46701986 - 46702043
Alignment:
Q  120 aatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||| ||| |||| | ||||| | ||| |||||||||||||||    
T  46701986 aatacttcctaaaaacacaggtataatattaaaatatcatcagcggtagttaactacc 46702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 353
Target Start/End: Complemental strand, 47110587 - 47110558
Alignment:
Q  324 atcaaattgcatcacactttggtcaaattg 353  Q
    ||||||||||||||||||||||||||||||    
T  47110587 atcaaattgcatcacactttggtcaaattg 47110558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 32430500 - 32430564
Alignment:
Q  114 acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacca 178  Q
    ||||| || |||||||||||||||| || ||||||||||||  |  || ||||||||||||||||    
T  32430500 acattaaaaacttcctaaaaacacatgtgaaatacttaaatgtccccagcggtagttaactacca 32430564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 36505761 - 36505809
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattga 182  Q
    |||||| |||||||||||||||||  || ||||||||||||||| ||||    
T  36505761 acacaaataaaatacttaaatacccccagcggtagttaactaccgttga 36505809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 52678378 - 52678442
Alignment:
Q  108 ttttctacattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaa 172  Q
    |||| |||||| |||| ||| |||||||| |||||||||||| ||||| || ||||| |||||||    
T  52678378 ttttttacatttaatagttcttaaaaacataagtaaaatactaaaatatctccaacgatagttaa 52678442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 32473188 - 32473112
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctgg 210  Q
    ||||||||||||||||||||| || | |   |||||||||||||  ||||||||||||||||||||||||| |||||    
T  32473188 acacaagtaaaatacttaaatgccctaagtagtagttaactaccgctgaggacccgacaacagttaactaccgctgg 32473112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 24689789 - 24689845
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaata-ccttcaacggtagttaactacca 178  Q
    |||| |||||||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  24689789 actttctaaaaacacaagtaaaatactaaaatatcctccaacggtagttaactacca 24689845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 6253302 - 6253381
Alignment:
Q  99 gaaaattgcttttcta-cattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||||||||| ||| ||| |||||  ||  |||||||||||||| |||||| ||  ||||||||||||||||||    
T  6253302 gaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaataattaaatgcccccaacggtagttaactacc 6253381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 603790 - 603738
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaacta 175  Q
    ||||| |||| ||||| ||||||||||||||||||  || |||||||||||||    
T  603790 acttcataaatacacacgtaaaatacttaaatacccccagcggtagttaacta 603738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 11459730 - 11459805
Alignment:
Q  102 aattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    |||||||||||| || || |||||| ||||||||||||||||||||||| ||||| ||  | | |||||||||||||    
T  11459730 aattgcttttctgactttcaatact-cctaaaaacacaagtaaaatactaaaatatctctagctgtagttaactacc 11459805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 32472429 - 32472481
Alignment:
Q  136 acaagtaaaatacttaaataccttcaacggtagttaactaccattgaggaccc 188  Q
    |||||||||||||| |||| ||| |  ||||||||||||||| ||||||||||    
T  32472429 acaagtaaaatactaaaatgcctcccgcggtagttaactaccgttgaggaccc 32472481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 44374027 - 44374075
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattga 182  Q
    |||||||||||  ||| || ||||| |||||||||||||||||||||||    
T  44374027 acacaagtaaatgactaaattacctccaacggtagttaactaccattga 44374075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 32370 - 32300
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactac 204  Q
    ||||||||||||||||||||| ||  || ||||||||||||||| ||||||||||| ||  ||||||||||    
T  32370 acacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggacccggcagtagttaactac 32300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 30026 - 29958
Alignment:
Q  136 acaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactac 204  Q
    ||||||||||||||||||| ||   | ||||||||||||||| ||||||||||| ||  ||||||||||    
T  30026 acaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagtagttaactac 29958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 34123565 - 34123623
Alignment:
Q  120 aatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacca 178  Q
    |||||||||||||||||||||||||||| | |||||||   ||||||||||||||||||    
T  34123565 aatacttcctaaaaacacaagtaaaatattaaaatacccctaacggtagttaactacca 34123623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 21761342 - 21761389
Alignment:
Q  163 cggtagttaactaccattgaggacccgacaacagttaactactgctgg 210  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  21761342 cggtagttaactaccgttgaggacccgacatcagttaactaccgctgg 21761389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 37770230 - 37770305
Alignment:
Q  134 acacaagtaaaatacttaaataccttcaacggtagttaactaccattgaggacccgacaacagttaactactgctg 209  Q
    ||||| ||||||||||||||| ||  |||||||||||||||| | ||||||| |||| | ||||||||||| ||||    
T  37770230 acacacgtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgatatcagttaactaccgctg 37770305  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 42486395 - 42486446
Alignment:
Q  125 ttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactac 176  Q
    ||||||||||||||||||||||||| |||||||| |  ||||||||||||||    
T  42486395 ttcctaaaaacacaagtaaaatactaaaatacctcctgcggtagttaactac 42486446  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 35574467 - 35574512
Alignment:
Q  99 gaaaattgcttttctacattgaatacttcctaaaaacacaagtaaa 144  Q
    ||||||||||||||||||| ||||||||||||   |||||||||||    
T  35574467 gaaaattgcttttctacatagaatacttcctattgacacaagtaaa 35574512  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 33216332 - 33216412
Alignment:
Q  97 ttgaaaattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactac 176  Q
    |||||||||| |||| | |||||||| |||||  ||  ||||||||||||||||||||| |  ||| ||||||||||||||    
T  33216332 ttgaaaattgtttttttgacattgaaaacttcacaatgacacaagtaaaatacttaaatgctctcagcggtagttaactac 33216412  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 42805946 - 42805866
Alignment:
Q  98 tgaaaattgcttttcta-cattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||| ||||||| |||  || ||||| |||||||| | ||||||||||||||||||| |   ||||||||||||||    
T  42805946 tgaaaattgtttttctaacatcaaaaacttcttaaaaacatatgtaaaatacttaaatacctccggtggtagttaactacc 42805866  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 6979090 - 6979019
Alignment:
Q  102 aattgcttttct-acattgaatacttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaa 172  Q
    |||||||||||| || || ||||||| |||||||||||||||||||||| ||||| || || ||||||||||    
T  6979090 aattgcttttctgacttttaatactttctaaaaacacaagtaaaatactaaaatatctccagcggtagttaa 6979019  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 2584511 - 2584564
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||    
T  2584511 acttcctaaaaacacaagtaaaatactaaaatacc-tcagctgtagttaactacc 2584564  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 5613834 - 5613877
Alignment:
Q  137 caagtaaaatacttaaataccttcaacggtagttaactaccatt 180  Q
    |||||||||||||||||||||  || ||||||||||||||||||    
T  5613834 caagtaaaatacttaaatacccccagcggtagttaactaccatt 5613877  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 12120247 - 12120194
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaataccttcaacggtagttaactacc 177  Q
    ||||||||||||||||||||||||| | |||||||  || |||||||||||||||    
T  12120247 acttcctaaaaacacaagtaaaatattaaaatacc-ccagcggtagttaactacc 12120194  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 26221213 - 26221245
Alignment:
Q  123 acttcctaaaaacacaagtaaaatacttaaata 155  Q
    ||||||||||||||||||||||||||| |||||    
T  26221213 acttcctaaaaacacaagtaaaatactaaaata 26221245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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