View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_21 (Length: 535)
Name: NF9026_low_21
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 41968219 - 41967796
Alignment:
| Q |
18 |
aaaaggaaatccaatataaccgttgtccgttgatatgccatatacttctgaaccaaaggtatgggaagggaagggaccacttaatcggtggagattagag |
117 |
Q |
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| T |
41968219 |
aaaaggaaatccaatataaccgttgtccgttgatatgccatatacttctgaaccaaaggtatgggaagggaagggaccacttaatcggtgcagattagag |
41968120 |
T |
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| Q |
118 |
ccaagtaagcagtgtttaacaatgacacgtgataatataaacccttccttgtatatagagcacatttgtcataaggttgctgtttacacatcatgatgca |
217 |
Q |
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| T |
41968119 |
ccaagtaagcagtgtttaacaatgacacgtgacaatgtaaacccttccttgtatatagagcacatttgtcataaggatgctgtttacacatcatgatgca |
41968020 |
T |
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| Q |
218 |
tggcataa--atggtgtatgtagtgtatgtagcatgcctttaattgataagagcaaggacaataaaacactggccacagagggcatcacgtgtcacaggc |
315 |
Q |
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| T |
41968019 |
tggcataaatatggtgtatgtagtgtatgtagcatgcctttaattgataagagcaaggacaataaaacactagccacagagggcatcacgtgtcacaggc |
41967920 |
T |
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| Q |
316 |
aaatgatgcacatatccatatatttaacctttaatcaagtaatcaaaacccaaagttacattagctattaaaggcaaggaatattatttcttaatcacta |
415 |
Q |
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| T |
41967919 |
aaatgatgcacatatccgtatatttaacctttaatcaagtaatcaaaccccaaagttacattagctattaaaggcaaggaatattatttcttaatcacta |
41967820 |
T |
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| Q |
416 |
gtgtttgctgtgaatcttacttaa |
439 |
Q |
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| T |
41967819 |
ctgtctgcggtgaatcttacttaa |
41967796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 462 - 519
Target Start/End: Complemental strand, 41967735 - 41967678
Alignment:
| Q |
462 |
tcgccaatatcacttacattttttatctctcttcttttattttctctcacaaatggcc |
519 |
Q |
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| T |
41967735 |
tcgccaatgtcacttacattttttatctctcttcttttattttctctcacaaatggcc |
41967678 |
T |
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