View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_22 (Length: 534)
Name: NF9026_low_22
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 47558769 - 47558266
Alignment:
| Q |
19 |
gtaaacatagataatatcaatcaattatta--agtctttcttaaattacacagtttaacacattcattcacacctttagaatccttttcacttggatgtg |
116 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
47558769 |
gtaaacatagataatatcaatcaattattacaagtctttcttaaattacacagtttaatacattcactcacatctttagaatccttctcacttggatgtg |
47558670 |
T |
|
| Q |
117 |
aattcgattatttcatgtgtctcatttgccgagaagtaagccatgagtagtggccgttcattttgcttgaatgctaacctatggacgaaggttctagtcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
47558669 |
aattcgattatttcatgtgtctcatttgccgagaagtaagccatgagcaatggccgttcattttgcttgaatgctaacct--gggcgtaggttctagtcc |
47558572 |
T |
|
| Q |
217 |
ctaaaaaatcttttttgtgaataaaaatataaaaacgaatacagcaagaggagacacaaggacttgaactgaacttatatttcaaaattgttcagttttc |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47558571 |
ctacaaaatcttttttgtgaataaaaatataaaaacgaatacagcaagaagagacacaaggacttgaactgaacttatattccaaaattgttcagttttc |
47558472 |
T |
|
| Q |
317 |
gttgcgacatatacaaatcttataa-attgtacggttaatatagtatatataaactatatgaggggtgtcatggcacccatgggctcctttgaagatctt |
415 |
Q |
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|||||||| |||||||||||||||| |||||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47558471 |
gttgcgacgtatacaaatcttataacattgtacgcttaaaaaagtatatataaactatatgagaggtgtcatggcacccatgggctcctttgaagatctt |
47558372 |
T |
|
| Q |
416 |
ccactagttccgagccttaaaacacaagaaacacatgaaagcaatgagatagaatgattagcatgattcttaaattggttatccctgtaacaaacaagtt |
515 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47558371 |
cctctagttccgagccttaaaacacaagaaacacatgaaagcaatgagatagaatgattagcatgattcttaaattggttatccctgtaacgaacaagtt |
47558272 |
T |
|
| Q |
516 |
cgatct |
521 |
Q |
| |
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|||||| |
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| T |
47558271 |
cgatct |
47558266 |
T |
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