View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_24 (Length: 498)
Name: NF9026_low_24
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Complemental strand, 4610898 - 4610411
Alignment:
| Q |
10 |
gacatcaaacatggaggcttcactgaagaagaggatgccatcattttcaccctctattctcaaatgggtagcaggcaagtactatttccaacttatttaa |
109 |
Q |
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| T |
4610898 |
gacatcaaacatggaggcttcactgaagaagaggatgccatcattttcaccctctattctcaaatgggtagcaggcaagtactatttccaacttatttaa |
4610799 |
T |
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| Q |
110 |
ttaagttgtatctattttcactatataatttccaaattgttattatttataaacgttgatcattgctaactgttataatcactttatttaatttagtagc |
209 |
Q |
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| T |
4610798 |
ttaagttgtatctattttcactatataatttccaaattgttattatt-ataaacgttgatcattgctaactgttataatcactttatttaatttagtagt |
4610700 |
T |
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| Q |
210 |
atatatagtttttcataagagttgataagtgtttagtgctaactattacaactttatttaaattagtatactatgtattatttttgtttaagagttgatg |
309 |
Q |
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| T |
4610699 |
atatatagtttttcataagagttgataagtgtttagtgctaactattacaactttatttaaattagtatactatgtattatttttctttaagagttgatg |
4610600 |
T |
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| Q |
310 |
atttttaatttgtaaaagttgggaagatttgtttattcaagtggatagtaaagtgagaaattaaaacatccttctgggttgggtcaatctgatggggata |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||||||| |
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| T |
4610599 |
atttttaatttgtaaaagttgggaagatttgtttattcaagtggatagtaaagtgagaaattaaaacaaccaactgggttgggtcaaactgaaggggata |
4610500 |
T |
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| Q |
410 |
acctctccatgatgtcataaattagggttttaattccgatactaaagtttaaattttagtgggaagagatgtcatatttagagtttgac |
498 |
Q |
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| T |
4610499 |
acctctccatgatgtcataaattagggtttgaattccgagactaaagtttaaatttcagttggaagagatgtcatatttagagtttgac |
4610411 |
T |
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