View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_low_26 (Length: 467)
Name: NF9026_low_26
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Original strand, 38462367 - 38462806
Alignment:
| Q |
19 |
ccagacgcatgttccatgttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgttttgatgtttatttctttttctgt |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462367 |
ccagacgcatgttccaagttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgttttgatgtttatttctttttctgt |
38462466 |
T |
|
| Q |
119 |
cctatctttttattatggtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462467 |
cctatctttttattatggtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaa |
38462566 |
T |
|
| Q |
219 |
cttagagtttggaatgatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462567 |
cttagagtttggaatgatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttat |
38462666 |
T |
|
| Q |
319 |
caataaatttcgttttattttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagct |
418 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462667 |
caatatatttcgttttattttggtcatataacatgtttattctattatttgactgttttgtgtgctaataatcactatgtttataaagcttgacatagct |
38462766 |
T |
|
| Q |
419 |
taacaaatagattgtttttgctgtatagctttgttctctg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38462767 |
taacaaatagattgtttttgctgtatagctttgttctctg |
38462806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 455
Target Start/End: Complemental strand, 52091585 - 52091171
Alignment:
| Q |
36 |
gttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgttttgatgtttatttctttttctgtcctatctttttattatg |
135 |
Q |
| |
|
||||||||||| || |||||||||| ||||| |||| | |||||||||||||||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
52091585 |
gttgttgtctactaatggagaccctacaataacgtaagattgaatgatcattttcatgtttttctgtt-----ctttttctgtcctatcttcatattatg |
52091491 |
T |
|
| Q |
136 |
gtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaatga |
235 |
Q |
| |
|
|||||||||||||||| ||||| || ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
52091490 |
gtggctttaagttaaa-gttatttattaagagtagtaatatgctatgtgcgggataaaatcatgattatggtattaaatcaaact-----tttggaatgg |
52091397 |
T |
|
| Q |
236 |
tgaa----tacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgt |
331 |
Q |
| |
|
|||| || |||||||| | ||||| |||| |||||| ||||||||||| | ||||| | |||| ||||||||||| | ||||||||| | ||||| | |
|
|
| T |
52091396 |
tgaataggtaggtaatgagttggaattgtatgctctcctctagtaatgcagtgttgtgtgtcattgacacaatttgttgtattttatcaacatatttctt |
52091297 |
T |
|
| Q |
332 |
tttattttggtcatataacatg-----tttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaat |
426 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||| ||| | |||| | | | | |||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
52091296 |
tttgttttagtcatataacatgtttcctttattctattgttttattgttctctatgc---taatcactatgtttataaagcttgcaatagcttttcaaat |
52091200 |
T |
|
| Q |
427 |
agattgtttttgctgtatagctttgttct |
455 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |
|
|
| T |
52091199 |
cgaatgtttttgctgtataactttgttct |
52091171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 36 - 424
Target Start/End: Original strand, 48754091 - 48754467
Alignment:
| Q |
36 |
gttgttgtctaacaacggagaccctataataaggtaacactgaatgatcattttcatgttttgatgtttatttctttttctgtcctatctttttattatg |
135 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||| | |||||||||||||||| ||||| ||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
48754091 |
gttgttgtctaacaatggagaccctacaataacgtaagattgaatgatcattttcacgtttttctgt---tttttttttctgtcctatcttcatattatg |
48754187 |
T |
|
| Q |
136 |
gtggctttaagttaaaagttatgtagtaaga--gtagtaatatgctacgtgtgggataaaatcatggttatggtattaaatcaaacttagagtttggaat |
233 |
Q |
| |
|
||||||||||||| |||||||| || ||||| || ||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
48754188 |
gtggctttaagtt-aaagttatttattaagagtgttgtaatatgctatgtgtgggataaaatcaggactatggtattaaatcaaact-----tttggaat |
48754281 |
T |
|
| Q |
234 |
gatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttgttatgttttatcaataaatttcgttt |
333 |
Q |
| |
|
| |||||| |||||||| | ||||| |||| |||||||||| ||||||| | | || | |||||||||||||||| ||||||||||| | ||||| ||| |
|
|
| T |
48754282 |
ggtgaataggtaatgagttggaattgtatgctctcctttagcaatgcagtgtcgcgtgtcattgccacaatttgttgtgttttatcaacatatttctttt |
48754381 |
T |
|
| Q |
334 |
tattttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaa |
424 |
Q |
| |
|
|||| | ||||| | | ||||||||||| ||| | |||| | | | | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48754382 |
tattctagtcatgtttc--ctttattctattgttttattgttctctatgc---taatcactatgtttataaagcttgccatagcttaacaa |
48754467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 452
Target Start/End: Complemental strand, 40733353 - 40733238
Alignment:
| Q |
336 |
ttttggtcatataacatgtttattctattatttgactgttttgtgtactaataatcactatgtttataaagcttgacatagcttaacaaatag--attgt |
433 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| ||||||| | ||||||||||| ||||| |||||| ||| ||||||||||||| ||| | |
|
|
| T |
40733353 |
ttttggtcatataacatgttttttctatcatttgactggtttgtgtgc---taatcactatgcttatacagcttggcatggcttaacaaatagatatttt |
40733257 |
T |
|
| Q |
434 |
ttttgctgtatagctttgt |
452 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
40733256 |
ttatgctgtatggctttgt |
40733238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 48753183 - 48753215
Alignment:
| Q |
347 |
taacatgtttattctattatttgactgttttgt |
379 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
48753183 |
taacatgtttattctattatttgactggtttgt |
48753215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University