View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_27 (Length: 467)
Name: NF9026_low_27
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 10385184 - 10384792
Alignment:
| Q |
17 |
gggagaagcaaaattcctgtcattgtcaaacttaattagaaagttattatgaaatacgaactttcatttatattttggatccct--atacctagagatta |
114 |
Q |
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| T |
10385184 |
gggagaagcaaaattcctgtcattgtcaaacttaattagaaagttattatgaaatacgaactttcatttatattttggatccctctatacctagagatta |
10385085 |
T |
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| Q |
115 |
tatatgaacaaaaccaatcagattttgtccaacaattctataccaaccaataatacctataattattgttcaacccccattggataattaatataaacat |
214 |
Q |
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| T |
10385084 |
tatatgaacaaaaccaatcagatttggtccaacaattctataccatccaataatacctataattattgttcaacccccattggataataaatataaacat |
10384985 |
T |
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| Q |
215 |
ggtttatcttaaccaaatcatgtgtgcatgtttgtaccttcttcaaacttgctattccaaacttaaagaatcacatttgtttccaatttatgctgccaca |
314 |
Q |
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| T |
10384984 |
ggtttatcttaaccaaatcatgtgtgcatgtttgtaccttcttcaaacttgctattccaaacttaaagaatcacatttgtttccaatttatgctgccaca |
10384885 |
T |
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| Q |
315 |
tggaatggttttaattatcttcgacnnnnnnncgctcaagaaataacttggttttgcactcatattatgtctatagaaatgtattcaatatcc |
407 |
Q |
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| T |
10384884 |
tggaatggttttaattatctttgacaaaaaaacgctcaagaaataacttggttttgcactcatattatgtctatagaaatgtattcaatatcc |
10384792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 10405445 - 10405644
Alignment:
| Q |
94 |
gatccctatacctagagattatatatgaacaaaaccaatcagattttgtccaacaattctataccaaccaataatacctataattattgttcaaccccca |
193 |
Q |
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| T |
10405445 |
gatctctatacctagagattat----gagcaaaacaattcagatttggtccaacaattctataccaactaataatacctataattattgttcaaccccca |
10405540 |
T |
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| Q |
194 |
ttggataattaatataaacatggtttatcttaaccaaatcatgtgtgcatgtt-----tgtaccttcttcaaacttgctattccaaacttaaagaatcac |
288 |
Q |
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| T |
10405541 |
ttggataataaatttaaacatggcttatcttaaccaaatcatgtgggcatgtttgtactgtaccttcctcaaacttgctattccaaactaacataatcac |
10405640 |
T |
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