View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_low_3 (Length: 1008)

Name: NF9026_low_3
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_low_3
NF9026_low_3
[»] chr5 (13 HSPs)
chr5 (29-651)||(29501951-29502573)
chr5 (800-993)||(29502790-29502983)
chr5 (676-833)||(29502642-29502799)
chr5 (811-913)||(29492576-29492675)
chr5 (439-492)||(296412-296465)
chr5 (257-367)||(6217640-6217749)
chr5 (257-414)||(22579453-22579610)
chr5 (277-346)||(794364-794432)
chr5 (437-494)||(11505320-11505377)
chr5 (437-494)||(11512714-11512771)
chr5 (437-494)||(11520090-11520147)
chr5 (437-494)||(11527498-11527555)
chr5 (433-494)||(27769881-27769942)
[»] chr7 (8 HSPs)
chr7 (276-427)||(1052399-1052550)
chr7 (437-494)||(5198021-5198078)
chr7 (29-75)||(1079713-1079759)
chr7 (437-486)||(27376341-27376390)
chr7 (431-490)||(5362359-5362418)
chr7 (29-75)||(48103695-48103741)
chr7 (437-486)||(3116914-3116963)
chr7 (258-319)||(11458871-11458932)
[»] scaffold0252 (1 HSPs)
scaffold0252 (437-494)||(17200-17257)
[»] chr4 (16 HSPs)
chr4 (437-494)||(38932755-38932812)
chr4 (431-494)||(24806662-24806725)
chr4 (257-319)||(17381284-17381346)
chr4 (432-490)||(17381483-17381541)
chr4 (322-415)||(29223361-29223455)
chr4 (437-494)||(51150951-51151008)
chr4 (431-490)||(14810291-14810350)
chr4 (437-495)||(13834437-13834495)
chr4 (322-384)||(30888502-30888564)
chr4 (257-414)||(40317713-40317870)
chr4 (257-414)||(40327787-40327944)
chr4 (441-490)||(4161825-4161874)
chr4 (431-492)||(9297464-9297525)
chr4 (431-492)||(11839881-11839942)
chr4 (437-494)||(38080874-38080931)
chr4 (437-494)||(56095131-56095188)
[»] chr3 (7 HSPs)
chr3 (431-492)||(23195654-23195715)
chr3 (431-495)||(46008635-46008699)
chr3 (431-492)||(34979108-34979169)
chr3 (431-489)||(30843655-30843713)
chr3 (257-319)||(51889757-51889819)
chr3 (431-492)||(14984519-14984580)
chr3 (438-491)||(53705891-53705944)
[»] chr1 (11 HSPs)
chr1 (431-492)||(6541117-6541178)
chr1 (28-75)||(11701960-11702007)
chr1 (257-319)||(6541006-6541068)
chr1 (431-489)||(34826994-34827052)
chr1 (30-78)||(32007619-32007667)
chr1 (261-316)||(38445216-38445271)
chr1 (441-495)||(9890630-9890684)
chr1 (431-489)||(36144982-36145040)
chr1 (437-495)||(52362020-52362078)
chr1 (431-492)||(5043427-5043488)
chr1 (437-494)||(49880167-49880224)
[»] chr8 (7 HSPs)
chr8 (431-495)||(3093883-3093947)
chr8 (257-324)||(28802283-28802350)
chr8 (337-414)||(2988301-2988379)
chr8 (432-494)||(7680943-7681005)
chr8 (29-75)||(24023436-24023482)
chr8 (258-383)||(29911557-29911681)
chr8 (437-494)||(41303087-41303144)
[»] chr6 (7 HSPs)
chr6 (433-495)||(25085019-25085081)
chr6 (431-492)||(31315215-31315276)
chr6 (431-490)||(7792208-7792267)
chr6 (441-496)||(21021035-21021090)
chr6 (432-494)||(9045397-9045459)
chr6 (29-75)||(12735264-12735310)
chr6 (437-487)||(33806854-33806904)
[»] chr2 (10 HSPs)
chr2 (431-492)||(15301519-15301580)
chr2 (258-314)||(18902941-18902997)
chr2 (448-492)||(20167482-20167526)
chr2 (257-324)||(6788525-6788592)
chr2 (431-490)||(21603526-21603585)
chr2 (28-74)||(4226991-4227037)
chr2 (437-495)||(7165674-7165732)
chr2 (431-489)||(30256233-30256291)
chr2 (443-492)||(2516769-2516818)
chr2 (437-494)||(41746437-41746494)
[»] scaffold0005 (1 HSPs)
scaffold0005 (431-490)||(29378-29437)
[»] scaffold0002 (1 HSPs)
scaffold0002 (431-490)||(349128-349187)


Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 29 - 651
Target Start/End: Original strand, 29501951 - 29502573
Alignment:
Q  29 catattttatgcattgtaccaactaaatgaattaagctcacgaggactcataatacatacatctatcaatgaattatagactcttgaaaaactacaattt 128  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29501951 catattttatgcactataccaactaaatgaattaagcttacgaggactcataatacatacatctatcaatgaattatagactcttgaaaaactacaattt 29502050  T
Q  129 aaataatagaatgtcatataaagatataatatattcaataacatttcctagtgtaaaatataaaatgtatgacattnnnnnnncctgaagaacaaaatta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  29502051 aaataatagaatgtcatataaagatataatatattcaataacatttcctagtgtaaaatataaaatgtatgacattaaaaaaacctgaagaacaaaatta 29502150  T
Q  229 ttttgcattaatttagatatggtaacattaatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaa 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  29502151 ttttgcattaatttagatatggtaacattaatagtcattttaattcctgaatgtgtaacaaatagccacgatagtcttttaatatatcaaattttttaaa 29502250  T
Q  329 ataatccttaattatacactacgttagtccaaattgtctataacgctaaaataatcatcaatgctcacaataattctttttatataaaaattaatatgac 428  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  29502251 ataatccttaattatacactacgttagtccaaattgtctttaacgctaaaataatcatcaatgctcactataattctttttatataaagattaatatgac 29502350  T
Q  429 ggtatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaattgactaattccttnnnnnnnntattttgacca 528  Q
     ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||        |||||||||||    
T  29502351 agtatgaaaataaacaagtatattgaaaaactaatacgacaatattaacgaaatattttaatgttaattgattaattccttaaaaaaaatattttgacca 29502450  T
Q  529 acgaattacacaatctattttaaaattctcatacattaagagattattgcggctacttgttgttaacacattcaagaccaaaatgaatactaaccttttt 628  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  29502451 acgaagtacacaatctattttaaaattctcatacattaagagattattgtggctacttgttgttaacacattcaagaccaaaatgaatactaaccttttc 29502550  T
Q  629 catttttaaggattacattagat 651  Q
    ||||||||||||||| |||||||    
T  29502551 catttttaaggattagattagat 29502573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 800 - 993
Target Start/End: Original strand, 29502790 - 29502983
Alignment:
Q  800 tttcagatttctaagataactaactttcagatttctccctaaaaataaatacttataattttctatctccaagaataagattagaagaaagttagtaaaa 899  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502790 tttcatatttataagataactaactttcagatttctccctaaaaataaatacttataattttctatctccaagaataagattagaagaaagttagtaaaa 29502889  T
Q  900 agatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtttctagcctctagatggagactttt 993  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502890 agatagcttgagagttgagaactaaaaggacattccttatgctcccttatctttcgggtaaaatactgtttctagcctctagatggagactttt 29502983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 676 - 833
Target Start/End: Original strand, 29502642 - 29502799
Alignment:
Q  676 atagtacgtacttggcagctgttgttgatttcttttcatagaacatattttgatgtcataaattgtattgtatgaagatgaatatattgttgtgctataa 775  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29502642 atagtacgtacttggcagctgttgttgatttcttttcatagaacatattttgatgtcataaattgtattgtatgaagatgaatatattgttgtgctataa 29502741  T
Q  776 ttggtgtttgttgtgtgatttgattttcagatttctaagataactaactttcagattt 833  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29502742 ttggtgtttgttgtgtgatttgattttcagatttctaagataactaactttcatattt 29502799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 811 - 913
Target Start/End: Original strand, 29492576 - 29492675
Alignment:
Q  811 taagataactaactttcagatttctccctaaaaataaatacttataattttctatctccaagaataagattagaagaaagttagtaaaaagatagcttga 910  Q
    ||||||||||| ||||||  |||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||||    
T  29492576 taagataactagctttcaattttctccctaaaaaaaa---cttataattttctatctccaagaataagattagaagaaacttaataaaatgaaagcttga 29492672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 296465 - 296412
Alignment:
Q  439 taaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||||||||||||||| | ||||||||||| |||||| |||||||||||||||    
T  296465 taaataagtatattgaagatctaatacgacaatattaatgaaatattttaatgt 296412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 367
Target Start/End: Complemental strand, 6217749 - 6217640
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagt 356  Q
    |||||||||||||  | | |||||||||| | ||||||||| ||||||  |||||||||||||  ||| |||||| ||| | ||||| |||| |||||||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaa-atttcaaaatagtccatgattatgcacttcgttagt 6217651  T
Q  357 ccaaattgtct 367  Q
    | |||| ||||    
T  6217650 caaaatagtct 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 414
Target Start/End: Complemental strand, 22579610 - 22579453
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagt 356  Q
    ||||| |||||||  |||||| |||||||  ||  || ||| ||||||  ||||||||||||| |||| |||||||||| | ||||||||||  |||| |    
T  22579610 taatattcattttgcttcctggatgtgtatgaagcagtcacaatagtccatcaatgtatcaaaatttt-aaaataatccctgattatacactttgttaat 22579512  T
Q  357 ccaaattgtctataacgctaaaataat-catcaatgctcacaataattctttttatata 414  Q
    | |||| ||||   ||||||||||||| | ||||| |||| ||||| || |||||||||    
T  22579511 caaaatagtctcggacgctaaaataatccctcaatactcaaaataactcattttatata 22579453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 794364 - 794432
Alignment:
Q  277 gaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattataca 346  Q
    ||||||||||| ||||| |||| |||| ||| |||| || ||||||||||||||||||||| || |||||    
T  794364 gaatgtgtaacgaatagtcacg-tagttttttaatgcataaaattttttaaaataatccttgatcataca 794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 11505320 - 11505377
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| | |||||||||| ||||||| || |||||||||||||    
T  11505320 aataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgtta 11505377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 11512714 - 11512771
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| | |||||||||| ||||||| || |||||||||||||    
T  11512714 aataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgtta 11512771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 11520090 - 11520147
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| | |||||||||| ||||||| || |||||||||||||    
T  11520090 aataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgtta 11520147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 11527498 - 11527555
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| | |||||||||| ||||||| || |||||||||||||    
T  11527498 aataagtaagtatattaaaagattaatacgacaatattaacaaattattttaatgtta 11527555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 433 - 494
Target Start/End: Complemental strand, 27769942 - 27769881
Alignment:
Q  433 tgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||||||| ||||||||||||| |  ||||| |||| ||||||  ||||||||||||||||    
T  27769942 tgaaaataagtaagtatattgaagagttaatatgacaatattaataaaatattttaatgtta 27769881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 427
Target Start/End: Original strand, 1052399 - 1052550
Alignment:
Q  276 tgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagtccaaattgtctataacgct 375  Q
    ||||| |||||| |||| |||| ||| | ||| ||||||||||| |||| |||||| | |||||||||||||||||||| || ||||||||| ||||  |    
T  1052399 tgaatatgtaacgaataaccacaataattttttaatgtatcaaaatttt-aaaatagttcttaattatacactacgttactcaaaattgtctctaacatt 1052497  T
Q  376 aaaataatc-atcaatgctcacaataattctttttatataaaaattaatatga 427  Q
    ||| || ||  ||||||   ||||||| |||||||||||| | ||||||||||    
T  1052498 aaattagtctttcaatgtcgacaataactctttttatatagagattaatatga 1052550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 5198021 - 5198078
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||||||    
T  5198021 aataaataagtatattgaaagactaatatgacaatattaatgaagtattttaatgtta 5198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 1079713 - 1079759
Alignment:
Q  29 catattttatgcattgtaccaactaaatgaattaagctcacgaggac 75  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  1079713 catattttatgcattgttccaactaactgagttaagctcacgaggac 1079759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 27376390 - 27376341
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattt 486  Q
    ||||| |||||||||||||||||||||| || | ||||||||||||||||    
T  27376390 aataagtaagtatattgaaaaactaatatgataatattaacgaaatattt 27376341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 5362418 - 5362359
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||| |||||||||||||||||||  ||||||| |||  |||||||||| |||||||||    
T  5362418 tatgataataaataagtatattgaaggactaatatgaccatattaacgaagtattttaat 5362359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 48103695 - 48103741
Alignment:
Q  29 catattttatgcattgtaccaactaaatgaattaagctcacgaggac 75  Q
    ||||||||||||||||| ||||| || ||| ||||||||||||||||    
T  48103695 catattttatgcattgtcccaaccaactgagttaagctcacgaggac 48103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 486
Target Start/End: Complemental strand, 3116963 - 3116914
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattt 486  Q
    ||||| |||||||||||||| ||||||| |||| |||||| |||||||||    
T  3116963 aataagtaagtatattgaaagactaatatgacaatattaatgaaatattt 3116914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 11458871 - 11458932
Alignment:
Q  258 aatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaa 319  Q
    |||||||||||| ||  |||||||||||| ||||| |||| |||||| ||||||||| ||||    
T  11458871 aatagtcattttcatctctgaatgtgtaataaataaccacaatagtccttcaatgtagcaaa 11458932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 437 - 494
Target Start/End: Complemental strand, 17257 - 17200
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||||||||||||||||||| |||| || |||| |||||||||| |||||||||||||    
T  17257 aataaataagtatattgaaatactagtatgacaatattaacgaagtattttaatgtta 17200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 38932755 - 38932812
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||||||||||||||||||  ||||||| |||| |||||| |||||||||||||||||    
T  38932755 aataaataagtatattgaaggactaatatgacaatattaatgaaatattttaatgtta 38932812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 431 - 494
Target Start/End: Original strand, 24806662 - 24806725
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| ||||| ||||||||||||||||||| || |||| ||||||| || |||||||||||||    
T  24806662 tatgacaataagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgtta 24806725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 17381284 - 17381346
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaa 319  Q
    |||||||||||||  |||||||||||||| ||| ||| ||| |||||| ||||||||||||||    
T  17381284 taatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaa 17381346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 432 - 490
Target Start/End: Original strand, 17381483 - 17381541
Alignment:
Q  432 atgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    |||| ||||| |||||||||||||  ||||||| |||| ||||||||||||||||||||    
T  17381483 atgataataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaat 17381541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 322 - 415
Target Start/End: Complemental strand, 29223455 - 29223361
Alignment:
Q  322 ttttaaaataatccttaattatacactacgttagtccaaattgtctataacgctaaaataatc-atcaatgctcacaataattctttttatataa 415  Q
    ||||| |||||||| | ||| | ||||| ||||||| |||| |||| ||||||||||||||||  |||||| ||||||||| |||||| ||||||    
T  29223455 ttttataataatccatgattgtgcactatgttagtcaaaatagtctctaacgctaaaataatctttcaatgttcacaataactcttttcatataa 29223361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 437 - 494
Target Start/End: Complemental strand, 51151008 - 51150951
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||||||  ||||||| |||| ||||||| ||||||||||||||||    
T  51151008 aataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgtta 51150951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 14810350 - 14810291
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||||||||| ||||| ||||||| |||||| | |||| |||||||||||||| |||||    
T  14810350 tatgaaaataactaagtctattgaagaactaacatgacaatattaacgaaatatattaat 14810291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 495
Target Start/End: Complemental strand, 13834495 - 13834437
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||| |||||||||||||  ||||||| |||| ||||||| || ||||||||||||||    
T  13834495 aataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaa 13834437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 30888564 - 30888502
Alignment:
Q  322 ttttaaaataatccttaattatacactacgttagtccaaattgtctataacgctaaaataatc 384  Q
    ||||||||||||| || ||||| ||||  ||||||| ||||  ||||||||||||||||||||    
T  30888564 ttttaaaataatctttgattattcactctgttagtcaaaatattctataacgctaaaataatc 30888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 414
Target Start/End: Complemental strand, 40317870 - 40317713
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagt 356  Q
    ||||||||||||| || | |||||||||||  ||| | ||| |||||   ||||||||| |||||||| |||||| ||||| ||| ||||||  |||| |    
T  40317870 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaattttt-aaaatagtccttgattgtacactttgttaat 40317772  T
Q  357 ccaaattgtctataacgctaaaataatc-atcaatgctcacaataattctttttatata 414  Q
    | |||| |||| | ||| ||||||||||  ||||| |||||||||| | |||| |||||    
T  40317771 caaaatagtctctgacgttaaaataatctctcaatactcacaataacttttttcatata 40317713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 414
Target Start/End: Complemental strand, 40327944 - 40327787
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagt 356  Q
    ||||||||||||| || | |||||||||||  ||| | ||| |||||   ||||||||| |||||||| |||||| ||||| ||| ||||||  |||| |    
T  40327944 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaattttt-aaaatagtccttgattgtacactttgttaat 40327846  T
Q  357 ccaaattgtctataacgctaaaataatc-atcaatgctcacaataattctttttatata 414  Q
    | |||| |||| | ||| ||||||||||  ||||| |||||||||| | |||| |||||    
T  40327845 caaaatagtctctgacgttaaaataatctctcaatactcacaataacttttttcatata 40327787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 4161825 - 4161874
Alignment:
Q  441 aataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||||||||||||| |||||||| |||| |||||| |||| ||||||||    
T  4161825 aataagtatattgaagaactaatatgacaatattaatgaaacattttaat 4161874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 9297525 - 9297464
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| |||||||||||||||| ||  ||||||| |||| ||||||| || |||||||||||    
T  9297525 tatgataataaataagtatatttaatgactaatatgacaatattaacaaagtattttaatgt 9297464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 11839942 - 11839881
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| ||||| ||||| |||||||  ||||||| |||| |||||||||| |||||||||||    
T  11839942 tatgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgt 11839881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 38080874 - 38080931
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||||||||||||||||||  ||||||| |||  ||||||| || |||||||||||||    
T  38080874 aataaataagtatattgaagtactaatatgactatattaacaaagtattttaatgtta 38080931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Complemental strand, 56095188 - 56095131
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| ||||||| |||| ||||||| || |||||||||||||    
T  56095188 aataagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgtta 56095131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 23195654 - 23195715
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| ||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||||||    
T  23195654 tatgacaataattaagtatattgaaagactaatatgacaatattaacgaaatactttaatgt 23195715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 495
Target Start/End: Complemental strand, 46008699 - 46008635
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||| |||||||||||||||| ||| | ||||| |||| |||||||||| ||||||||||||||    
T  46008699 tatgacaataaataagtatattaaaagattaatatgacaatattaacgaattattttaatgttaa 46008635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 34979108 - 34979169
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| ||||| |||||||||||||  ||||||| || | ||||||||||||||||||||||    
T  34979108 tatgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgt 34979169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 489
Target Start/End: Complemental strand, 30843713 - 30843655
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaa 489  Q
    ||||| |||||||||||||||||||| ||||||| |||| |||||| |||  |||||||    
T  30843713 tatgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattttaa 30843655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 51889757 - 51889819
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaa 319  Q
    ||||||||||||| ||  ||||||||||||  | ||| ||| |||||||||||||||||||||    
T  51889757 taatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaa 51889819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 14984580 - 14984519
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| |||||  ||||||||||||  | ||||| |||| ||||||||||||||||||||||    
T  14984580 tatgacaataagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgt 14984519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 438 - 491
Target Start/End: Original strand, 53705891 - 53705944
Alignment:
Q  438 ataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatg 491  Q
    |||| ||||||||||||| |||||||| |||| ||||||| || ||||||||||    
T  53705891 ataagtaagtatattgaataactaatatgacaatattaacaaagtattttaatg 53705944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 431 - 492
Target Start/End: Complemental strand, 6541178 - 6541117
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| ||||| |||||||||||||  ||||||| |||| ||||||||||||||||||||||    
T  6541178 tatgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatgt 6541117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 11702007 - 11701960
Alignment:
Q  28 acatattttatgcattgtaccaactaaatgaattaagctcacgaggac 75  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||||    
T  11702007 acatattttatgcattgtcccaaccaactgaattaagctcacgaggac 11701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 6541006 - 6541068
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaa 319  Q
    |||||||||||||||| |||||||||||||| ||||| ||  |||||| || |||||||||||    
T  6541006 taatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaa 6541068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 34826994 - 34827052
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaa 489  Q
    ||||| |||||||||||||||||||  ||||||| |||| ||||||||||| |||||||    
T  34826994 tatgacaataaataagtatattgaatgactaatatgacaatattaacgaaacattttaa 34827052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 32007619 - 32007667
Alignment:
Q  30 atattttatgcattgtaccaactaaatgaattaagctcacgaggactca 78  Q
    |||||||||||||||| ||||| || ||| |||||||||||||||||||    
T  32007619 atattttatgcattgtcccaacgaactgagttaagctcacgaggactca 32007667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 38445271 - 38445216
Alignment:
Q  261 agtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatc 316  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||| || ||||||||    
T  38445271 agtcattttgattcctgaatgtgcaacaaatagtcacaatagtcctttaatgtatc 38445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 9890684 - 9890630
Alignment:
Q  441 aataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    |||||||||||||||  ||||||| |||| |||||||||| |||| |||||||||    
T  9890684 aataagtatattgaaggactaatatgacaatattaacgaagtattctaatgttaa 9890630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 36144982 - 36145040
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaa 489  Q
    ||||| ||||| |||||||||||||||||||||| |||| ||||||  ||| |||||||    
T  36144982 tatgacaataactaagtatattgaaaaactaatatgacaatattaataaaagattttaa 36145040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 495
Target Start/End: Original strand, 52362020 - 52362078
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||||||||||||| ||| |||||||| || | ||||||| || ||||||||||||||    
T  52362020 aataaataagtatatcgaagaactaatatgataatattaacaaagtattttaatgttaa 52362078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 5043427 - 5043488
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| |||||||||||||||||||  || ||||  ||| ||||||| ||||||||||||||    
T  5043427 tatgacaataaataagtatattgaatgaccaatataacaatattaacaaaatattttaatgt 5043488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 49880167 - 49880224
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||||||| ||||||| |||| ||| || ||| |||||||||||||    
T  49880167 aataagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgtta 49880224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 495
Target Start/End: Original strand, 3093883 - 3093947
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||| ||||||||| |||||||||||||||||| |||| |||||||  || |||||||||||||    
T  3093883 tatgacaataaataactatattgaaaaactaatatgacagtattaacagaacattttaatgttaa 3093947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 28802283 - 28802350
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttt 324  Q
    |||||||||||||| |  ||||||||||||||||||| ||| ||||||  || |||||||||| ||||    
T  28802283 taatagtcattttagtcgctgaatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaatttt 28802350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 2988379 - 2988301
Alignment:
Q  337 taattatacactacgttagtccaaattgtctataacgctaaaataatcat-caatgctcacaataattctttttatata 414  Q
    ||||||| ||||| ||||||| |||| |||  | |||||||||||||  | |||| |||||||||||||||||||||||    
T  2988379 taattatgcactatgttagtcaaaatagtcattgacgctaaaataatatttcaatactcacaataattctttttatata 2988301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 432 - 494
Target Start/End: Original strand, 7680943 - 7681005
Alignment:
Q  432 atgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||| ||||| |||| ||||||||| ||||| | |||| |||||||||| |||||||||||||    
T  7680943 atgacaataagtaaggatattgaaatactaagatgacaatattaacgaattattttaatgtta 7681005  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 24023436 - 24023482
Alignment:
Q  29 catattttatgcattgtaccaactaaatgaattaagctcacgaggac 75  Q
    ||||||||||||||||| |||||||| |||  |||||||||||||||    
T  24023436 catattttatgcattgttccaactaactgagctaagctcacgaggac 24023482  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 383
Target Start/End: Complemental strand, 29911681 - 29911557
Alignment:
Q  258 aatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttttaaaataatccttaattatacactacgttagtc 357  Q
    |||||||||||| ||  ||||||||||||| | | ||||| |||||  || |||||||||||  |||||||||| | | ||| | | |||| ||||||||    
T  29911681 aatagtcattttcatctctgaatgtgtaacgagtggccacaatagttgtttaatgtatcaaa-attttaaaatagttcataagtgtccacttcgttagtc 29911583  T
Q  358 caaattgtctataacgctaaaataat 383  Q
     |||| |||| ||||| |||||||||    
T  29911582 aaaatagtctctaacgttaaaataat 29911557  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Original strand, 41303087 - 41303144
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    ||||| |||||||||| ||| ||||||| |||| ||||||| || |||||||||||||    
T  41303087 aataattaagtatattaaaagactaatatgacaatattaacaaattattttaatgtta 41303144  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 25085019 - 25085081
Alignment:
Q  433 tgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||||||| |||||||||||||| | ||||| |||| ||||||| || ||||||||||||||    
T  25085019 tgaaaataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaa 25085081  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 31315215 - 31315276
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| |||||||||||||||||||| | ||||| |||| ||| || |||||||||||||||    
T  31315215 tatgataataaataagtatattgaaatattaatatgacaatatgaaagaaatattttaatgt 31315276  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 7792208 - 7792267
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    |||||||| |||||| |||||||||||| ||||| |||| ||||||  ||||||||||||    
T  7792208 tatgaaaacaaataaatatattgaaaaaataatatgacaatattaataaaatattttaat 7792267  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 496
Target Start/End: Original strand, 21021035 - 21021090
Alignment:
Q  441 aataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaat 496  Q
    |||||||||||||||  ||||||| || | || |||||||||||||||||||||||    
T  21021035 aataagtatattgaaggactaatatgataataataacgaaatattttaatgttaat 21021090  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 432 - 494
Target Start/End: Complemental strand, 9045459 - 9045397
Alignment:
Q  432 atgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||| ||||||||| || |||||| || ||||| |||||||||||||| | ||||||||||||    
T  9045459 atgacaataaataaatacattgaagaagtaatatgacattattaacgatacattttaatgtta 9045397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 12735264 - 12735310
Alignment:
Q  29 catattttatgcattgtaccaactaaatgaattaagctcacgaggac 75  Q
    ||||||||||||||||| ||||| || ||| ||||||||||||||||    
T  12735264 catattttatgcattgtcccaaccaactgagttaagctcacgaggac 12735310  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 487
Target Start/End: Original strand, 33806854 - 33806904
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatatttt 487  Q
    ||||| |||||||||||||| ||||||| |||| ||||||| |||||||||    
T  33806854 aataattaagtatattgaaagactaatatgacaatattaacaaaatatttt 33806904  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 15301519 - 15301580
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||| ||||| |||||||||||||  ||||||| |||| |||||||||| |||||||||||    
T  15301519 tatgataataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgt 15301580  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 18902941 - 18902997
Alignment:
Q  258 aatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgta 314  Q
    ||||||||||||  | |||||||||||||  | ||||||||||||||||||||||||    
T  18902941 aatagtcattttcgtccctgaatgtgtaatgattagccacgatagtctttcaatgta 18902997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 448 - 492
Target Start/End: Complemental strand, 20167526 - 20167482
Alignment:
Q  448 atattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||||||| |||||||||||| || |||||||||||||||||||    
T  20167526 atattgaaagactaatacgacaatactaacgaaatattttaatgt 20167482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 324
Target Start/End: Complemental strand, 6788592 - 6788525
Alignment:
Q  257 taatagtcattttaattcctgaatgtgtaacaaatagccacgatagtctttcaatgtatcaaattttt 324  Q
    ||||||||||||| || | | |||||||||||||||| ||  |||||| |||||||||||||| ||||    
T  6788592 taatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaatttt 6788525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 21603585 - 21603526
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||| ||||| ||||| ||||||| |||||| | |||| ||||||||||||||||||||    
T  21603585 tatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatattttaat 21603526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 4226991 - 4227037
Alignment:
Q  28 acatattttatgcattgtaccaactaaatgaattaagctcacgagga 74  Q
    |||||||||||||||||| ||||| || ||| |||||||||||||||    
T  4226991 acatattttatgcattgttccaaccaattgagttaagctcacgagga 4227037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 495
Target Start/End: Complemental strand, 7165732 - 7165674
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgttaa 495  Q
    ||||| |||||||||||||| ||||||| || | ||||||| || ||||||||||||||    
T  7165732 aataagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaa 7165674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 30256233 - 30256291
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaa 489  Q
    ||||| ||||||||||||||||||   ||||||| |||| ||||||| |||||||||||    
T  30256233 tatgataataaataagtatattgagtgactaatatgacaatattaacaaaatattttaa 30256291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 2516818 - 2516769
Alignment:
Q  443 taagtatattgaaaaactaatacgacattattaacgaaatattttaatgt 492  Q
    ||||||| |||||||||||||| |||| ||||||| ||| ||||||||||    
T  2516818 taagtatgttgaaaaactaatatgacaatattaacaaaacattttaatgt 2516769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 437 - 494
Target Start/End: Complemental strand, 41746494 - 41746437
Alignment:
Q  437 aataaataagtatattgaaaaactaatacgacattattaacgaaatattttaatgtta 494  Q
    |||||||||||||||||||   |||||| |||| |||||| ||| |||||||||||||    
T  41746494 aataaataagtatattgaagggctaatatgacaatattaatgaagtattttaatgtta 41746437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 29378 - 29437
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||||||||| ||||| ||||||| |||||| | |||| |||||||||||||| |||||    
T  29378 tatgaaaataactaagtctattgaagaactaacatgacaatattaacgaaatatattaat 29437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Original strand, 349128 - 349187
Alignment:
Q  431 tatgaaaataaataagtatattgaaaaactaatacgacattattaacgaaatattttaat 490  Q
    ||||| ||||| ||||| ||||||| |||||| | |||| ||||||||||||||||||||    
T  349128 tatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatattttaat 349187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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