View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_low_30 (Length: 445)
Name: NF9026_low_30
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_30 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 31609348 - 31609779
Alignment:
| Q |
14 |
aaactatcaaaaatgaaaaacaagtttttcaagtttctaccaaaacgacctgtagcttcggtttctagttatcaaaacccaacattgagtcctaacgcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31609348 |
aaactatcaaaaatgaaaaacaagtttttcaagtttctaccaaaacgacctgtagcttcggtttctagttatcaaaacccaacattgagtcctaacgcaa |
31609447 |
T |
|
| Q |
114 |
gtgttacaactgcaagaaaggtttcaataattccaaaagaagcgcgaagaaagcatggaagtataagctttagcgcgcgagaaccatcctctcctaaggt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31609448 |
gtgttacaactgcaagaaaggtttcaataattccaaaagaagcgcgaagaaagcatagaagtataagctttagcgcgcgagaaccatcctctcctaaggt |
31609547 |
T |
|
| Q |
214 |
ttcttgcatgggtcaagtgaagtctaagaagaagaaaagaaaggccaaaaggattcatcaatcttcaacaaaaaataacgattctgttactagtcatgaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31609548 |
ttcttgcatgggtcaagtgaagtctaagaagaagaaaagaaaggccaaaaggattcatcaatcttcaacaaaaaataatgattctgttactagtcatgaa |
31609647 |
T |
|
| Q |
314 |
aataagaagattctgttacaaagtgagaaagctttggtcgtggaagagaaccaagagtttgcaccctctatgttgatagtaccgtcattgggtacaatga |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31609648 |
aataagaagattctgttacaaagtgagaaagctttggtcgtggaagagaaccaagagtttgcaccctctatgttgatagtaccgtcattgggtacgatga |
31609747 |
T |
|
| Q |
414 |
aaaaatttgaaagtggtagaggttcattgtct |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31609748 |
aaaaatttgaaagtggtagaggttcattgtct |
31609779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University