View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_low_33 (Length: 430)
Name: NF9026_low_33
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 32628049 - 32628303
Alignment:
| Q |
18 |
ggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtatacatgcaatcggcacataaaattagaagaaaacaagtacatttttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32628049 |
ggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtatacatgaaatcggcacataaaattagaagaaaacaagtacatttttc |
32628148 |
T |
|
| Q |
118 |
taattacaactatgagcttctttgatctcatattaacttagtttagttggatttaaattcagctttgagcatgcaacaacactaaaacttttggggagag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32628149 |
taattacaactatgagcttctttgatctcatattaacttagtttagttgaatttgaattcagctttgagcatgcaacaacgctaaaacttttggggagag |
32628248 |
T |
|
| Q |
218 |
ttttcccacttattcaattttaaaatgtgaatttctaaccactaagtaagtggac |
272 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| | ||||||| |
|
|
| T |
32628249 |
ttttcccacttattcaattttaaaatatgaatttctaaccactaaattagtggac |
32628303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Original strand, 32628412 - 32628442
Alignment:
| Q |
382 |
ttgaggtgttacgtttgagttattgaatact |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32628412 |
ttgaggtgttacgtttgagttattgaatact |
32628442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 32704278 - 32704331
Alignment:
| Q |
19 |
gttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtata |
72 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| | || |||||||||| |||| |
|
|
| T |
32704278 |
gttatggcttcttctctcaaaagttttgtcaaagaaatcacctttcgctatata |
32704331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 6878803 - 6878775
Alignment:
| Q |
402 |
tattgaatactccctccgtcccaaattgt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6878803 |
tattgaatactccctccgtcccaaattgt |
6878775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 5811694 - 5811748
Alignment:
| Q |
18 |
ggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtata |
72 |
Q |
| |
|
|||||| ||||| |||||||||| |||||||||| | || ||||||||||||||| |
|
|
| T |
5811694 |
ggttatagcttcgtctctcaaagattttgtcaaagaaatcacctttcgctgtata |
5811748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 27737013 - 27737067
Alignment:
| Q |
18 |
ggttatggcttcatctctcaaaggttttgtcaaatatattacctttcgctgtata |
72 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| ||| | || ||||||||||||||| |
|
|
| T |
27737013 |
ggttatagcttcgtctctcaaaggttttgttaaagaaatcacctttcgctgtata |
27737067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 53722448 - 53722420
Alignment:
| Q |
402 |
tattgaatactccctccgtcccaaattgt |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53722448 |
tattgaatactccctccgtcccaaattgt |
53722420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 19208900 - 19208862
Alignment:
| Q |
224 |
cacttattcaattttaaaatgtgaatttctaaccactaa |
262 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
19208900 |
cacttattcactttaaaaatgtgaatttctaaccactaa |
19208862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 32534116 - 32534158
Alignment:
| Q |
164 |
ttggatttaaattcagctttgagcatgcaacaacactaaaact |
206 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
32534116 |
ttggattcaaattcagctttgagcatgcaacaacgttaaaact |
32534158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 39467542 - 39467506
Alignment:
| Q |
222 |
cccacttattcaattttaaaatgtgaatttctaacca |
258 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |
|
|
| T |
39467542 |
cccacttattcaacttaaaaatgtgaatttctaacca |
39467506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University