View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_34 (Length: 426)
Name: NF9026_low_34
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 47308489 - 47308872
Alignment:
| Q |
17 |
gtttttattggaatatgtagtttgtcactttctcttggcatgtgtagagtatattatattataaacaaacactgtattaaactcaatattctattagctg |
116 |
Q |
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| T |
47308489 |
gtttttattggaatatgtagtttgtcactttctcttggcatgtgtagagtatattatattataaacaaacactgtattaaactcaatattctattagctg |
47308588 |
T |
|
| Q |
117 |
catacttcattgtgctagaaggtttggtttattggccgctgtgataactttgtttttcttaattaataaacagggtgctagattcattaagaatgccttg |
216 |
Q |
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| T |
47308589 |
catacttcattgtgctagaaggcttggtttattggccgttgtgataactttgtttttcttaattaataaacagggtgctagattcattaagaatgccttg |
47308688 |
T |
|
| Q |
217 |
gaggaactggtcgaagcaaattctcaaatgatgcgtagcaatatgtttggcaaaaaggtgcttgataagtttgagggtaaaaatcggcgtaataatatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47308689 |
gaggaactggtcgaagcaaattctcaaatgatgcgtagcaatatgtttggcaaaaaggtgcttgataagtttgagggtaaaaatcggcgtaataatatat |
47308788 |
T |
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| Q |
317 |
aaacatgtatttcatacctgctaggagtaacccttttaaaattagtgtgttaagctatgtgtgttagttgtttattagttatcc |
400 |
Q |
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| T |
47308789 |
aaacatgtatttcatacctgctaggagtaacccttttaaaattagtgtgttaagctatgtgtgttagttgtttattagttatcc |
47308872 |
T |
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