View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_36 (Length: 403)
Name: NF9026_low_36
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 42416028 - 42416400
Alignment:
| Q |
16 |
acatcaattatccaacaagtttcttacaaaatggttcaagtgttcaacacaatatattctcattcaaagttttgtacaactcttctaccaatttttgttt |
115 |
Q |
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| T |
42416028 |
acatcaattatccaacaagtttcttacaaaatggttcaagtgttcaacacaatatattctcattcaaagttttgtacaactcttataccaatttttgttt |
42416127 |
T |
|
| Q |
116 |
tgttttgtataacaagttccaaattatgcgaaacaagtttcaaattctccaatatctcaagtctcaaatacttgttaggcttgttgatctatgcgcccct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42416128 |
tgttttgtataacaagttccaaattatgcgaaacaagtttcaaattctccaatatctcaagtctcaaatacttgttaggcttgttgatctatgtgcccct |
42416227 |
T |
|
| Q |
216 |
ggtagtcgatctgtgctcataactattaaaatcgagactagatattctaatttactatctgagtgccatacccgtttgttcatcaatctatccgatattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42416228 |
ggtagtcgatctgtgctcataactattaaaatcgagactagatattctaatttactatctgagtgccatacccgtttgttcatcaatctatccgatattt |
42416327 |
T |
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| Q |
316 |
tgattatagaacgctggtgctacatttcaaaacaactagatattcaaagaaccggatagattgatgaacaaac |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42416328 |
tgattatagaacgctggtgctacatttcaaaacaactagatattcaaagaaccggatagattgatgaacaaac |
42416400 |
T |
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