View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_low_4 (Length: 997)

Name: NF9026_low_4
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_low_4
NF9026_low_4
[»] chr1 (6 HSPs)
chr1 (1-980)||(1462343-1463326)
chr1 (382-779)||(1496698-1497096)
chr1 (4-115)||(1496331-1496442)
chr1 (210-306)||(1496520-1496616)
chr1 (204-267)||(1481970-1482034)
chr1 (76-120)||(1480926-1480970)
[»] chr8 (4 HSPs)
chr8 (325-777)||(26790295-26790744)
chr8 (4-305)||(26790785-26791081)
chr8 (892-953)||(26789905-26789966)
chr8 (28-115)||(971412-971499)
[»] chr3 (3 HSPs)
chr3 (498-777)||(50276096-50276375)
chr3 (4-115)||(50276748-50276859)
chr3 (206-306)||(50276570-50276670)
[»] chr2 (6 HSPs)
chr2 (558-756)||(15869060-15869258)
chr2 (522-758)||(21980424-21980660)
chr2 (522-758)||(45197316-45197552)
chr2 (27-104)||(15869716-15869793)
chr2 (212-300)||(15869512-15869600)
chr2 (212-272)||(45197191-45197251)
[»] chr7 (1 HSPs)
chr7 (557-704)||(48664531-48664678)
[»] chr4 (5 HSPs)
chr4 (561-756)||(53075402-53075597)
chr4 (597-758)||(48436902-48437063)
chr4 (16-77)||(53074842-53074903)
chr4 (4-115)||(44533477-44533588)
chr4 (211-300)||(53075040-53075129)
[»] chr6 (2 HSPs)
chr6 (510-706)||(3156280-3156476)
chr6 (204-286)||(28950049-28950131)
[»] chr5 (2 HSPs)
chr5 (211-300)||(15161675-15161764)
chr5 (685-756)||(15161884-15161955)


Alignment Details
Target: chr1 (Bit Score: 881; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 1 - 980
Target Start/End: Complemental strand, 1463326 - 1462343
Alignment:
Q  1 agggccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463326 agggccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattg 1463227  T
Q  101 tcataatggtacctacatgtgtatatggcagtgttaggaaattgagttaaatattttacattagttaata---ttaaaataaaatgaaagtcgtgaatcg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  1463226 tcataatggtacctacatgtgtatatggcagtgttaggaaattgagttaaatattttacattagttaataatattaaaataaaatgaaagtcgtgaatcg 1463127  T
Q  198 tgataatgttatcttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463126 tgataatgttatcttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaac 1463027  T
Q  298 tgccaaaataataaattnnnnnnn-ccaatgatttaaatgttcaagtacataaaaataaatgtaacattattttctaaagccaacttcaacacataccac 396  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463026 tgccaaaataataaattaaaaaaaaccaatgatttaaatgttcaagtacataaaaataaatgtaacattattttctaaagccaacttcaacacataccac 1462927  T
Q  397 gatacggatggtgattgacacagcataaatctgttcacaaccaaacattttgttattagaaaactnnnnnnnnttaagtaaagtcaaaagattgaaatag 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||        ||||||||||||||||||||||| |||    
T  1462926 gatacggatggtgattgacacagcataaatctgttcacaaccaaacattttgtcattagaacactaaaaaaaattaagtaaagtcaaaagattgaattag 1462827  T
Q  497 ataagcatggaaacttacggtataattcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgagg 596  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1462826 atacgcatggaaacttacggtataattcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgagg 1462727  T
Q  597 acaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccag 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1462726 acaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcgtcatttacaccatctccag 1462627  T
Q  697 tcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaaggtgttaaacactttttaa 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1462626 tcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaaggggttaaacactttttaa 1462527  T
Q  797 ttggacatcattaagaggtgtccaaagtgtgtctgagaaatgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttgattt 896  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1462526 ttggacatcattaaaaggtgtccaaagtgtgtctgagaagtgtccgtgtccaaaacaacttaaatatgataaatatataaatgattgtcgcctttgattt 1462427  T
Q  897 ttggttttgacagggaatctatctaagggatcgagcaattcgacaatcaaaattcctgccaaaacaaaaaattaacattaaaaa 980  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1462426 ttggttttgacagggaatctatctaagggatggagcaattcgacaatcaaaattcctgccaaaacaaaaaattaacattaaaaa 1462343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 382 - 779
Target Start/End: Original strand, 1496698 - 1497096
Alignment:
Q  382 ttcaacacataccacgatacggatggtgattgacacagcataaatctgttca-caaccaaacattttgttattagaaaactnnnnnnnnttaagtaaagt 480  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||  ||||   ||||        || |||||| |    
T  1496698 ttcaacacttaccacaatacggatggtgattgacacagcataaatctgttcaacaatcaaactttttgcgattactcaactaaaaaaaatttagtaaatt 1496797  T
Q  481 caaaagattgaaatagataagcatggaaacttacggtataattcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgag 580  Q
    ||||| |||||| | |||| ||| ||||||| || |||||||||||||| || || ||||| |  | ||||||||||||||| || ||||||||||| ||    
T  1496798 caaaatattgaattggatatgcaaggaaactaacagtataattcttcatcctttgaaaaatcgctcggctggtgagcacagcgctaataatgacactaag 1496897  T
Q  581 accaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatca 680  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||| || |||||     
T  1496898 accgggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaactgcaattccgatatcggctttctttaacgcaggagcatcg 1496997  T
Q  681 tttacaccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaagg 779  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||| |||||||| ||| | || ||| ||||||| ||||||    
T  1496998 tttacaccatctcctgtcattccacatatatgcttcttctcttgcagcctcttgacgatttcgtatttgtgctctaccatatcaaacaaagataaaagg 1497096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 1496331 - 1496442
Alignment:
Q  4 gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca 103  Q
    ||||||||||| || || |||| ||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  1496331 gccatgtaacttcctaggacaacaccagtagcaaatatctccctcagtttccaactatcaggtagtggagatggtttcactctatcctttgatattgtca 1496430  T
Q  104 taatggtaccta 115  Q
    ||||||||||||    
T  1496431 taatggtaccta 1496442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 210 - 306
Target Start/End: Original strand, 1496520 - 1496616
Alignment:
Q  210 cttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgccaaaat 306  Q
    |||||||||||| || || ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| |||| |||||||    
T  1496520 cttaccatcatttagaatggcaataatcaaaaccatgaagggtgcaaaatcaaacttccagatcaacgcaataaacataaaaccgaactaccaaaat 1496616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Complemental strand, 1482034 - 1481970
Alignment:
Q  204 tgttatcttaccatcattcagtatt-gcaatgatcaaaaccatgaatggtgcaaaatcaaatttc 267  Q
    ||||||||||||||| |||| |||| | |||||||||||||||||| ||||||||||||||||||    
T  1482034 tgttatcttaccatctttcaatatttgtaatgatcaaaaccatgaagggtgcaaaatcaaatttc 1481970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 1480926 - 1480970
Alignment:
Q  76 ggtttaactctatcctttgatattgtcataatggtacctacatgt 120  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  1480926 ggtttaactctatcctttgatattgtaataatggtacctaaatgt 1480970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 325 - 777
Target Start/End: Complemental strand, 26790744 - 26790295
Alignment:
Q  325 atgatttaaatgttcaagtacataaaaataaa-tgtaacattattttctaaagccaacttcaacacataccacgatacggatggtgattgacacagcata 423  Q
    |||||||||| ||||||||||||| ||| ||| || |||| | |||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||    
T  26790744 atgatttaaaagttcaagtacatagaaaaaaagtgcaacagttttttgtaaagccaattttaacacataccacgatacggatggtgattgacacggcata 26790645  T
Q  424 aatctgtt-cacaaccaaacattttgttattagaaaactnnnnnnnnttaagtaaagtcaaaagattgaaatagataagcatggaaacttacggtataat 522  Q
    |||||||| || || |||||||||||| |||||||||||         || || ||||||||||||||| |||     ||||||||||| || ||||| |    
T  26790644 aatctgttacataatcaaacattttgtgattagaaaactaaaaacgtata-gtgaagtcaaaagattgatatat----gcatggaaactaaccgtatagt 26790550  T
Q  523 tcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagc 622  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26790549 tcttcattctctggaaaatggccctgctggtgagcacggcactgataatgacactaagaccaggttcagtgaggacaatatcagaagcacttctagcagc 26790450  T
Q  623 atctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctctct 722  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||| ||||| ||||| |||    
T  26790449 atctgtggcatcagcaaccgcaattccaatgtctgctttctttagtgcaggtgcatcgtttacaccatctccagtcattccacatatatgtttcctttct 26790350  T
Q  723 tgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaa 777  Q
    || |||||||| ||||||||||| ||||||||| | || | ||||| ||||||||    
T  26790349 tggagcctcttaacaatttcatacttgtgttctaccatattatacagagagaaaa 26790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 26791081 - 26790785
Alignment:
Q  4 gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  26791081 gccatgtaactgccaagcacaataccagtagcaaatatctccttaagtttccaactatcaggcaatggagatggtttaactctatcctttgatattgtca 26790982  T
Q  104 taatggtacctacatgtgtatatggcagtgttaggaaattgagttaaatattttacattagtt----aatatt-aaaataaaatgaaagtcgtgaatcgt 198  Q
    ||||||||||||||  || |||||| |||||| ||| ||| |||||||||||| ||  |||||    |||||| ||||| |||||||       ||||||    
T  26790981 taatggtacctaca--tgcatatggtagtgtt-ggacattaagttaaatatttgactatagttagaaaatattaaaaatgaaatgaa-------aatcgt 26790892  T
Q  199 gataatgttatcttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaact 298  Q
    || |||||||||||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| | ||| ||||||||||    
T  26790891 gagaatgttatcttaccatcattaagtattgcaatgatcaaaaccatgaagggagaaaaatcaaatttccaaatcaaagcaataagcataaaaccaaact 26790792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 892 - 953
Target Start/End: Complemental strand, 26789966 - 26789905
Alignment:
Q  892 gatttttggttttgacagggaatctatctaagggatcgagcaattcgacaatcaaaattcct 953  Q
    ||||||||||||||||||| || ||||  || |||| |||||||||||||||||||||||||    
T  26789966 gatttttggttttgacaggaaacctattaaaaggatggagcaattcgacaatcaaaattcct 26789905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 971412 - 971499
Alignment:
Q  28 ccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtcataatggtaccta 115  Q
    ||||||||||| |||||  | || ||||| |||||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||    
T  971412 ccagtagcaaaaatttcactaagcttccaactatcaggaagtggtgaaggcttaaccctatctttggatattgtcataatggtaccta 971499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 498 - 777
Target Start/End: Complemental strand, 50276375 - 50276096
Alignment:
Q  498 taagcatggaaacttacggtataattcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgagga 597  Q
    ||||| |||||||| || ||||| |||||||| || |||||||| | |||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||    
T  50276375 taagcttggaaactaacagtatagttcttcatcctttggaaaattgccctgcttgtgagcactgcactaataatgacactcagaccgggctcagtaagga 50276276  T
Q  598 caatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagt 697  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  || || || || || |||||||| || ||    
T  50276275 caatatcagaagcacctctagcagcatctgtagcatcagcaacagcaattccaatatctgctctctttaaggcaggagcgtcgttgacaccatcacctgt 50276176  T
Q  698 cattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgcaatttcatacaaagagaaaa 777  Q
    ||||||||| ||||| ||||||||||| ||| |||| || |||||||||||||||||| | || ||||| ||||||||||    
T  50276175 cattccacatatatgtttcctctcttgcagcttctttacgatttcatatttgtgttctaccatgtcatagaaagagaaaa 50276096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 50276859 - 50276748
Alignment:
Q  4 gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca 103  Q
    |||||||| || || ||||||| ||||||||||||||| ||  | |||||||| || || || | |||||||||||| ||||||||||| ||||||||||    
T  50276859 gccatgtagctacctagcacaacaccagtagcaaatatctctctcagtttccaactgtctggcattggagatggttttactctatccttggatattgtca 50276760  T
Q  104 taatggtaccta 115  Q
    ||||||||||||    
T  50276759 taatggtaccta 50276748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 50276670 - 50276570
Alignment:
Q  206 ttatcttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgccaaaa 305  Q
    |||||| ||||||||| ||||| || || || || |||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||    
T  50276670 ttatctcaccatcatttagtatggcgataattaacaccatgaagggtgcaaaatcaaacttccagatcaaggcaatgaacatgaaaccaaactggcaaaa 50276571  T
Q  306 t 306  Q
    |    
T  50276570 t 50276570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 8e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 558 - 756
Target Start/End: Complemental strand, 15869258 - 15869060
Alignment:
Q  558 acagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctg 657  Q
    ||||||||||| || ||||| | ||||||||| || | ||| ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |    
T  15869258 acagcactgatgataacactcaaaccaggttctgttaagactatatcagaagcacctcttgcagcatcagtagcatcagcaacagcaattccaatatcgg 15869159  T
Q  658 ctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctg 756  Q
    |||| || |  || || |||||||| |||||||||||||||||||||  ||| |||||||||||||| |   |||| ||||||||||| || |||||||    
T  15869158 cttttttcaatgcaggagcatcattcacaccatctccagtcattccaacaatgtgcttcctctcttgtaatttcttcacaatttcatacttatgttctg 15869060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 522 - 758
Target Start/End: Original strand, 21980424 - 21980660
Alignment:
Q  522 ttcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcag 621  Q
    |||||||| |||||||| |||| ||| || || | ||||||||| | ||| ||||| | ||| || ||||| | |||||| || || ||||| || || |    
T  21980424 ttcttcatcctctggaagatggccctacttgtcaacacagcactcacaatcacactcaaacccggctcagtcaagacaatgtctgaggcactccttgcgg 21980523  T
Q  622 catctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctctc 721  Q
    |||| || ||||||||||||||||| ||||| ||||| ||||| |  || || ||||| |||||||||||||| ||||| ||||| || |||||||| ||    
T  21980524 catcagttgcatcagcaacagcaataccaatgtctgccttcttcaatgctggtgcatcgtttacaccatctccggtcataccacatatgtgcttcctatc 21980623  T
Q  722 ttgaagcctcttgacaatttcatatttgtgttctgca 758  Q
     || | |||||| ||||| || || ||||| ||||||    
T  21980624 ctgcaacctcttcacaatctcgtacttgtgctctgca 21980660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 522 - 758
Target Start/End: Original strand, 45197316 - 45197552
Alignment:
Q  522 ttcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcag 621  Q
    ||||||||||| || ||||| | |||||| ||||| || ||||| | ||| ||||| |  ||||| || |||||||| || ||||| |||| || ||| |    
T  45197316 ttcttcattctttgaaaaatagccctgcttgtgaggactgcactcacaataacactcaatccaggctctgtgaggactatgtcagatgcacctcgagctg 45197415  T
Q  622 catctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctctc 721  Q
    |||| || |||||||| || |||||||||||||||||| | || |  || || |||||||| || |||||||| ||||| |||   || || ||||| ||    
T  45197416 catcagttgcatcagccactgcaattccaatatctgctcttttcaatgcaggagcatcattcacgccatctcctgtcatcccaactatgtgtttcctatc 45197515  T
Q  722 ttgaagcctcttgacaatttcatatttgtgttctgca 758  Q
     || || ||||| ||||| |||||||| |||||||||    
T  45197516 ctggagtctctttacaatctcatatttatgttctgca 45197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 15869793 - 15869716
Alignment:
Q  27 accagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtcat 104  Q
    |||||| |||||||||||  | ||||||||||||||||| | ||||||||| |||||||| |||||||| ||||||||    
T  15869793 accagttgcaaatatttctctcagtttccagctatcaggcattggagatggcttaactctgtcctttgaaattgtcat 15869716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 15869600 - 15869512
Alignment:
Q  212 taccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgc 300  Q
    |||||||||| |  || ||||| ||||||||||||||||| |  |||||||| ||||| ||||  ||||| |||||||| |||||||||    
T  15869600 taccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaacttccatatcagtgcaataaacatgaagccaaactgc 15869512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 45197191 - 45197251
Alignment:
Q  212 taccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaat 272  Q
    |||||||||| ||||| ||||||||||||||||| || || |  |||||||||||||||||    
T  45197191 taccatcattaagtatggcaatgatcaaaaccataaaaggagagaaatcaaatttccaaat 45197251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 557 - 704
Target Start/End: Complemental strand, 48664678 - 48664531
Alignment:
Q  557 cacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatct 656  Q
    |||||| |||||||| ||||| |  ||||| ||||| | ||| ||||||| ||||||||| || ||||||||||||||||  ||||| |||||||| |||    
T  48664678 cacagcgctgataataacacttaagccaggctcagttaagactatatcagcagcacttcttgcggcatctgtagcatcagacacagctattccaatgtct 48664579  T
Q  657 gctttctttagcgccggggcatcatttacaccatctccagtcattcca 704  Q
    |||||||| |  ||||||||||||||||| ||||||||||||||||||    
T  48664578 gctttcttcaatgccggggcatcatttactccatctccagtcattcca 48664531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 561 - 756
Target Start/End: Original strand, 53075402 - 53075597
Alignment:
Q  561 gcactgataatgacactgagaccaggttcagtgaggacaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctt 660  Q
    |||||||| || ||||| |  |||||||| || | |||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||      
T  53075402 gcactgatgataacactcaatccaggttctgtcaagacaatgtcagaagcacctcttgcagcatctgtagcatcagcaacagcgattccaatatcagccc 53075501  T
Q  661 tctttagcgccggggcatcatttacaccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctg 756  Q
    | || |  || || ||||| || || |||||||| ||||| |||||||| |||||||| ||||| | | || | ||||||||||||||||| ||||    
T  53075502 ttttcaaagctggagcatcgttgaccccatctccggtcatcccacaaatgtgcttcctttcttgcaacttccttacaatttcatatttgtgctctg 53075597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 597 - 758
Target Start/End: Original strand, 48436902 - 48437063
Alignment:
Q  597 acaatatcagaagcacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccag 696  Q
    ||||| |||||||||||||| |||||||| || |||||  |||| ||||| || || ||||| ||||| || || || |||||||| |||||||| ||||    
T  48436902 acaatgtcagaagcacttcttgcagcatcagttgcatcgtcaactgcaataccgatgtctgccttcttcagtgcaggtgcatcattcacaccatcaccag 48437001  T
Q  697 tcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctgca 758  Q
    |||| |||  ||| || ||  | || || |||||||| ||||| || |||||||||||||||    
T  48437002 tcataccaacaatgtgttttttgtcctgcagcctcttcacaatctcgtatttgtgttctgca 48437063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 53074842 - 53074903
Alignment:
Q  16 ccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatgg 77  Q
    ||||| ||||| ||||||||||||||||| || | ||||||||||||||| | |||||||||    
T  53074842 ccaagaacaattccagtagcaaatatttctttcaatttccagctatcaggcaatggagatgg 53074903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 44533588 - 44533477
Alignment:
Q  4 gccatgtaactgccaagcacaataccagtagcaaatatttcctttagtttccagctatcaggtagtggagatggtttaactctatcctttgatattgtca 103  Q
    |||| |||||| |||||||||| ||| |||| |||||| |||  ||| ||||||||||| || || || |||||||| || ||||| || || |||||||    
T  44533588 gccaagtaactaccaagcacaacaccggtagtaaatatctccgatagcttccagctatctggaagaggtgatggttttaccctatctttggaaattgtca 44533489  T
Q  104 taatggtaccta 115  Q
    | || |||||||    
T  44533488 tgatagtaccta 44533477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 53075040 - 53075129
Alignment:
Q  211 ttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgc 300  Q
    ||||||||||| || || ||||| ||||| |||||||| || |  || ||||||||||| ||||  ||||| |||||||| |||||||||    
T  53075040 ttaccatcattaagaatggcaataatcaagaccatgaaaggagagaagtcaaatttccagatcagtgcaatgaacatgaagccaaactgc 53075129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 510 - 706
Target Start/End: Complemental strand, 3156476 - 3156280
Alignment:
Q  510 cttacggtataattcttcattctctggaaaatggacctgctggtgagcacagcactgataatgacactgagaccaggttcagtgaggacaatatcagaag 609  Q
    ||||| || |||||||||||||| ||||| || |  |  || || ||||| ||||| || || ||||||||||| |||||||| || ||||| || ||||    
T  3156476 cttactgtgtaattcttcattctttggaatatagctcgacttgtcagcacggcactaatgataacactgagacctggttcagttagaacaatgtcggaag 3156377  T
Q  610 cacttctagcagcatctgtagcatcagcaacagcaattccaatatctgctttctttagcgccggggcatcatttacaccatctccagtcattccaca 706  Q
    | || | ||| ||||| || |||||  ||||||| |||||||||||||||||||| || || || |||||||| || || || || |||||||||||    
T  3156376 cgctacgagctgcatcagttgcatcgtcaacagctattccaatatctgctttcttaagagcaggagcatcattaacgccgtcaccggtcattccaca 3156280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 28950131 - 28950049
Alignment:
Q  204 tgttatcttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaaca 286  Q
    |||||||||||||||||| | |||| |||||||||||||||  |||  | ||||||||||| |||| || |||||||| ||||    
T  28950131 tgttatcttaccatcattgaatattacaatgatcaaaaccaacaatatttcaaaatcaaatatccatattaaagcaataaaca 28950049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 15161675 - 15161764
Alignment:
Q  211 ttaccatcattcagtattgcaatgatcaaaaccatgaatggtgcaaaatcaaatttccaaatcaaagcaattaacatgaaaccaaactgc 300  Q
    ||||||||||| |  || ||||| ||||||||||||||||| |  |||||||||||||| ||||  ||||| ||||| || |||||||||    
T  15161675 ttaccatcatttaaaatggcaataatcaaaaccatgaatggagagaaatcaaatttccatatcagtgcaataaacataaagccaaactgc 15161764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 756
Target Start/End: Original strand, 15161884 - 15161955
Alignment:
Q  685 caccatctccagtcattccacaaatatgcttcctctcttgaagcctcttgacaatttcatatttgtgttctg 756  Q
    ||||||||||||||||||||  ||| |||||||||||||| |   |||| ||||||||||| || |||||||    
T  15161884 caccatctccagtcattccaacaatgtgcttcctctcttgtaatttcttcacaatttcatacttatgttctg 15161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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