View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_47 (Length: 355)
Name: NF9026_low_47
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_47 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 39747735 - 39748089
Alignment:
| Q |
1 |
ttacataaagtctacatataaatatcaaactattattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatga |
100 |
Q |
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| T |
39747735 |
ttacataaagtctacatataaatatcaaactattattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctaccatga |
39747834 |
T |
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| Q |
101 |
aaaataatcggacattgtttattatccatgtttgtagctcaaagttgtcattactcattaaacgactaatgaatatttccgcagcaagagcagcagaaag |
200 |
Q |
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| T |
39747835 |
aaaataatcggacattgtttattatccatgtttgtagctccaagttgtcattactcattaaacgactaatgaatatttccgcagcgagagcagcagaaag |
39747934 |
T |
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| Q |
201 |
atctgtaaatacataacataacgtgttatgtttaaacaacactttaaagtttagaaactaaaagcaatagttggtatacttacacatgtaaaatagaggc |
300 |
Q |
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| T |
39747935 |
atctataaatacataacataacgtgttatgtttaaacaacactttaaggtttagaaactaaaagcaatagttggtatacttacacatgtaaagtagaggc |
39748034 |
T |
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| Q |
301 |
ctggaactgtatgtaagatttgtgcaggtcaacagaaagatgacaaaaattgata |
355 |
Q |
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| T |
39748035 |
ctggaactgtatgtaagatatgtgcaggtcaacagaaagatgacaaaaattgata |
39748089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 27021594 - 27021487
Alignment:
| Q |
33 |
ttattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtt |
132 |
Q |
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| T |
27021594 |
ttattgcttgtacacttacctgtatgtgaaaattgcatacagaagatgagctgaagcagctaccttaaaaaataatcggaccttgtttattatgcatgtc |
27021495 |
T |
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| Q |
133 |
tgtagctc |
140 |
Q |
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| T |
27021494 |
tgttgctc |
27021487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 27086802 - 27086909
Alignment:
| Q |
33 |
ttattgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtt |
132 |
Q |
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| T |
27086802 |
ttattgcttgtatacttacctgtatgtgacaattgcatacataagttgagccgaagcagctaccataaaaaataaccggaccttgtttattatccatgtt |
27086901 |
T |
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| Q |
133 |
tgtagctc |
140 |
Q |
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| T |
27086902 |
tgttgctc |
27086909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 26979838 - 26979689
Alignment:
| Q |
85 |
gaagcagctactatgaaaaataatcggacattgtttattatccatgtttgtagctcaaagttgtcattactcattaaacgactaatgaatatttccgcag |
184 |
Q |
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| T |
26979838 |
gaagcagctaccgtaaaaaataatcggaccttgtttattatccatgtttgttgctcta---tgtcatcattcgttaaacgaataatgaatacttccaaaa |
26979742 |
T |
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| Q |
185 |
caagagcagcagaaagatctgtaaatacataa--cataacgtgttatgtttaa |
235 |
Q |
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| T |
26979741 |
atagagcaacacaaagctctgtaaatataaaatccataacatgttatgtttaa |
26979689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 11633336 - 11633196
Alignment:
| Q |
37 |
tgtttttacacttacttgtatgtgcaaattgcatatagaaattgaactgaagcagctactatgaaaaataatcggacattgtttattatccatgtttgta |
136 |
Q |
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| T |
11633336 |
tgtttgtatacttacctatatgtgaaaattgtatacataagttgaactgaagcagctgccataaaaaataaacggacgttgtttattatccatgtttgtt |
11633237 |
T |
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| Q |
137 |
gctcaaagttgtcattactcattaaacgactaatgaatatttcc |
180 |
Q |
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| T |
11633236 |
gctcaatgtcgtcat---tcgttaaacgaataatgaatacttcc |
11633196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 34682236 - 34682087
Alignment:
| Q |
85 |
gaagcagctactatgaaaaataatcggacattgtttattatccatgtttgtagctcaaagttgtcattactcattaaacgactaatgaatatttccgcag |
184 |
Q |
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| T |
34682236 |
gaagcagctaccatcaaaaataatcggaccttgtttattatccatgtttgttgctctatgtcgtcat---ttgttaaacgaataatgaatacttccacaa |
34682140 |
T |
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| Q |
185 |
caagagcagcagaaagatctgtaaatacataa--cataacgtgttatgtttaa |
235 |
Q |
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| T |
34682139 |
atagagcaacacaaagctctgtaaatataaaatccataacatgttatgtttaa |
34682087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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