View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9026_low_49 (Length: 352)

Name: NF9026_low_49
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9026_low_49
NF9026_low_49
[»] chr6 (10 HSPs)
chr6 (35-225)||(13742180-13742367)
chr6 (35-225)||(13747680-13747867)
chr6 (292-334)||(13742100-13742142)
chr6 (292-334)||(13747600-13747642)
chr6 (300-335)||(13731725-13731760)
chr6 (293-334)||(13760446-13760487)
chr6 (103-203)||(20568255-20568358)
chr6 (104-177)||(1968994-1969069)
chr6 (103-151)||(8381213-8381261)
chr6 (103-151)||(8810634-8810682)
[»] chr5 (4 HSPs)
chr5 (101-151)||(35109392-35109442)
chr5 (112-148)||(10045335-10045371)
chr5 (103-151)||(27679492-27679540)
chr5 (103-151)||(34206221-34206269)
[»] chr3 (4 HSPs)
chr3 (163-214)||(44976630-44976679)
chr3 (106-177)||(29373446-29373519)
chr3 (103-151)||(17588356-17588404)
chr3 (104-177)||(22472311-22472386)
[»] chr8 (2 HSPs)
chr8 (104-159)||(38955211-38955266)
chr8 (103-151)||(7679896-7679944)
[»] chr7 (2 HSPs)
chr7 (112-151)||(6567416-6567455)
chr7 (112-148)||(37240100-37240136)
[»] chr1 (6 HSPs)
chr1 (104-151)||(35283499-35283546)
chr1 (102-151)||(18056735-18056784)
chr1 (103-176)||(9639809-9639884)
chr1 (103-159)||(10699200-10699256)
chr1 (103-151)||(19620570-19620618)
chr1 (104-177)||(44732631-44732706)
[»] chr4 (7 HSPs)
chr4 (106-151)||(42316843-42316888)
chr4 (104-177)||(3036052-3036127)
chr4 (115-151)||(6841538-6841574)
chr4 (103-151)||(11269688-11269736)
chr4 (107-151)||(19124641-19124685)
chr4 (103-159)||(33933756-33933812)
chr4 (104-160)||(55853124-55853180)
[»] scaffold0896 (1 HSPs)
scaffold0896 (103-151)||(3135-3183)
[»] chr2 (3 HSPs)
chr2 (104-177)||(1844815-1844890)
chr2 (103-151)||(37320536-37320584)
chr2 (115-151)||(42200693-42200729)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 13742367 - 13742180
Alignment:
Q  35 aattgagccaaagttaaacaataattagacaaaaatgtcctcgtcagcttaactaatttggtaaagacgtccccgtcagcttaactcagttggtaaagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||  ||||||     
T  13742367 aattgagccaaagttaaacaataattagacaaaaatgtcc--gtcaacttaactaagttggtaaagacgttcc-gtcagcttaactcagttaataaagac 13742271  T
Q  135 attacataatatatgcacgggccggttggaacctcggacacccacttattcaatttataaaagtgaattcatagccactatgttgcttgac 225  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13742270 attacataatatatgcacgggccggttggaaccccggacacccacttattcaatttataaaagtgaattcatagccactatgttgcttgac 13742180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 35 - 225
Target Start/End: Complemental strand, 13747867 - 13747680
Alignment:
Q  35 aattgagccaaagttaaacaataattagacaaaaatgtcctcgtcagcttaactaatttggtaaagacgtccccgtcagcttaactcagttggtaaagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||||||||||||||  ||||||     
T  13747867 aattgagccaaagttaaacaataattagacaaaaatgtcc--gtcaacttaactaagttggtaaagacgttcc-gtcagcttaactcagttaataaagac 13747771  T
Q  135 attacataatatatgcacgggccggttggaacctcggacacccacttattcaatttataaaagtgaattcatagccactatgttgcttgac 225  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13747770 attacataatatatgcacgggccggttggaaccccggacacccacttattcaatttataaaagtgaattcatagccactatgttgcttgac 13747680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 13742142 - 13742100
Alignment:
Q  292 gtgagaagggatggatgaatcataccaattgaagggaaccaaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13742142 gtgagaagggatggatgaatcataccaattgaagggaaccaaa 13742100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 334
Target Start/End: Complemental strand, 13747642 - 13747600
Alignment:
Q  292 gtgagaagggatggatgaatcataccaattgaagggaaccaaa 334  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13747642 gtgagaagggatggatgaatcataccaattgaagggaaccaaa 13747600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 13731760 - 13731725
Alignment:
Q  300 ggatggatgaatcataccaattgaagggaaccaaaa 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  13731760 ggatggatgaatcataccaattgaagggaaccaaaa 13731725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 13760487 - 13760446
Alignment:
Q  293 tgagaagggatggatgaatcataccaattgaagggaaccaaa 334  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  13760487 tgagaaaggatggatgaatcataccgattgaagggaaccaaa 13760446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 20568358 - 20568255
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggaca-cccacttattcaatttataaaagtg 199  Q
    |||||||| |||||| |||||||||||| || ||| ||||||||||||| ||| |  |||| ||||| || ||| ||||||||||||  ||||||| |||    
T  20568358 gtccccgtgagcttagctcagttggtaaggacattgcataatatatgcaggggtcggggttcgaaccccgaacaccccacttattcaccttataaaggtg 20568259  T
Q  200 aatt 203  Q
    ||||    
T  20568258 aatt 20568255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 1968994 - 1969069
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||||| |||||| |||||||||||  || |||||||| |||||||| |||||  |||| ||||| |||||||||    
T  1968994 tccccgtgagcttagctcagttggtagggatattacatattatatgcaggggccggggttcgaaccccggacaccc 1969069  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 8381261 - 8381213
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| |||||||||||||||||||||| | | ||||| |||||||    
T  8381261 gtccccgtgagcttaactcagttggtaaagacaatgcataacatatgca 8381213  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 8810634 - 8810682
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||| ||| |||||| ||||||||||||||| | |||||||||||||||    
T  8810634 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgca 8810682  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 35109392 - 35109442
Alignment:
Q  101 acgtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||| ||| |||||||||||||||||||||| | |||||||||||||||    
T  35109392 acgtccacgtgagcttaactcagttggtaaagacaatacataatatatgca 35109442  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 10045335 - 10045371
Alignment:
Q  112 agcttaactcagttggtaaagaaattacataatatat 148  Q
    |||||||||||||||||||||| | ||||||||||||    
T  10045335 agcttaactcagttggtaaagataatacataatatat 10045371  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 27679492 - 27679540
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| |||||| ||||||||||||||| | | |||||||||||||    
T  27679492 gtccccgtgagcttagctcagttggtaaagataatgcataatatatgca 27679540  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 34206221 - 34206269
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| || ||||||||||||||||||| | | |||||||||||||    
T  34206221 gtccccgtgagtttaactcagttggtaaagacaatgcataatatatgca 34206269  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 44976630 - 44976679
Alignment:
Q  163 gaacctcggacacccacttattcaatttataaaagtgaattcatagccacta 214  Q
    |||||||||||||||||||||||| ||  ||||||||||||| |||||||||    
T  44976630 gaacctcggacacccacttattcactt--taaaagtgaattcttagccacta 44976679  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 29373519 - 29373446
Alignment:
Q  106 cccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||| ||||||||||||||||||| || ||| |||| |||||||| |||||  |||| ||||||| |||||||    
T  29373519 cccgtgagcttaactcagttggtaaggatattgcatattatatgcaggggccggggttcgaacctcagacaccc 29373446  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 17588356 - 17588404
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| ||||||||||||||||||| || | | |||||||||||||    
T  17588356 gtccccgtgagcttaactcagttggtaaggacaatgcataatatatgca 17588404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 22472386 - 22472311
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||||| |||||||||||||||||| ||| ||| |||| |||||||| | |||  |||| ||||| |||||||||    
T  22472386 tccccgtgagcttaactcagttggtagagatattgcatattatatgcaagagccggggttcgaaccccggacaccc 22472311  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 38955266 - 38955211
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggccgg 159  Q
    ||||||| ||||||||||||||||||  || |||||||| |||||||| |||||||    
T  38955266 tccccgtgagcttaactcagttggtagggatattacatattatatgcaggggccgg 38955211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 7679896 - 7679944
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| |||||||||||||||| ||||| | | |||||||||||||    
T  7679896 gtccccgtaagcttaactcagttggcaaagacaatgcataatatatgca 7679944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 6567455 - 6567416
Alignment:
Q  112 agcttaactcagttggtaaagaaattacataatatatgca 151  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  6567455 agcttaactcagttggtaaggatattacataatatatgca 6567416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 37240136 - 37240100
Alignment:
Q  112 agcttaactcagttggtaaagaaattacataatatat 148  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  37240136 agcttaactcagttggtaaagacattgcataatatat 37240100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 35283499 - 35283546
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    ||||||| | |||||||||||||||||||| |||||||| ||||||||    
T  35283499 tccccgtgaacttaactcagttggtaaagatattacatattatatgca 35283546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 18056784 - 18056735
Alignment:
Q  102 cgtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    ||||||||| ||||||||||||||||||| || | | |||||||||||||    
T  18056784 cgtccccgtaagcttaactcagttggtaaggacaatgcataatatatgca 18056735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 9639884 - 9639809
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggccg--gttggaacctcggacacc 176  Q
    |||||||| ||||||||||| ||||||| || | | ||||||||||||| || |||  ||| ||||||||||||||    
T  9639884 gtccccgtgagcttaactcacttggtaaggacaatgcataatatatgcaaggtccggagttcgaacctcggacacc 9639809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 10699256 - 10699200
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggccgg 159  Q
    |||| ||||||||||||||||||| || ||| |||||||| |||||| | |||||||    
T  10699256 gtcctcgtcagcttaactcagttgttagagatattacatattatatgtaggggccgg 10699200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 19620570 - 19620618
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| |||||| |||||||||||| || | |||||||||||||||    
T  19620570 gtccccgtgagcttagctcagttggtaaggacaatacataatatatgca 19620618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 44732631 - 44732706
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||||| ||||||||||||||||||  || ||| |||| |||||||| |||||  |||| ||||| |||||||||    
T  44732631 tccccgtgagcttaactcagttggtagggatattgcatattatatgcaagggccggggttcgaaccccggacaccc 44732706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 42316888 - 42316843
Alignment:
Q  106 cccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||    
T  42316888 cccgtgagcttaactcagttggtaaagacagtgcataatatatgca 42316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 3036127 - 3036052
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||||| ||||||||||||||||||  || ||| |||| |||||||| |||||  |||| ||||| |||||||||    
T  3036127 tccccgtgagcttaactcagttggtagggatattgcatattatatgcaggggccgaggttcgaaccccggacaccc 3036052  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 6841574 - 6841538
Alignment:
Q  115 ttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||||||||||| || |||||||||||||||||    
T  6841574 ttaactcagttggtaaggacattacataatatatgca 6841538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 11269688 - 11269736
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||||||| ||||||||| ||||||||| || | |||||||||||||||    
T  11269688 gtccccgtgagcttaacttagttggtaaggacaatacataatatatgca 11269736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 19124685 - 19124641
Alignment:
Q  107 ccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||| ||||||||||||||| |||||| | |||||||||||||||    
T  19124685 ccgtgagcttaactcagttgataaagacaatacataatatatgca 19124641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 33933812 - 33933756
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggccgg 159  Q
    |||||||| |||||| |||||||||||  || ||| ||||||||||||| |||||||    
T  33933812 gtccccgtgagcttagctcagttggtagggacattgcataatatatgcaggggccgg 33933756  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 55853180 - 55853124
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggccggt 160  Q
    ||||||| |||||| ||||||||||| ||| ||| |||| |||||||| ||||||||    
T  55853180 tccccgtgagcttagctcagttggtagagatattgcatattatatgcaggggccggt 55853124  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 3135 - 3183
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||| ||| |||||| ||||||||||||||| | |||||||||||||||    
T  3135 gtcctcgtgagcttagctcagttggtaaagacaatacataatatatgca 3183  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 1844815 - 1844890
Alignment:
Q  104 tccccgtcagcttaactcagttggtaaagaaattacataatatatgcacgggcc--ggttggaacctcggacaccc 177  Q
    ||||||| |||||| |||||||||||  || ||| |||| |||||||| |||||  |||| |||||||||||||||    
T  1844815 tccccgtaagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaacctcggacaccc 1844890  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 37320584 - 37320536
Alignment:
Q  103 gtccccgtcagcttaactcagttggtaaagaaattacataatatatgca 151  Q
    |||| ||| |||||||||||||||||||||| | | |||||||||||||    
T  37320584 gtccacgtgagcttaactcagttggtaaagacaatgcataatatatgca 37320536  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 42200693 - 42200729
Alignment:
Q  115 ttaactcagttggtaaagaaattacataatatatgca 151  Q
    ||||||||||||||||||| | |||||||||||||||    
T  42200693 ttaactcagttggtaaagacaatacataatatatgca 42200729  T

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