View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_51 (Length: 313)
Name: NF9026_low_51
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 43128857 - 43128586
Alignment:
| Q |
20 |
acaaatccataaactacatttttatggtagaaaactagaaatttttgaacnnnnnnnnaataaatgagcattgtgaatttgtagtttacggtacatgtgt |
119 |
Q |
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| T |
43128857 |
acaaatccataaactacatttttatggtagaaaactagaaattt--gaacttttttttaataaatgagcattgtgaatttgtggtttacggtacatgtgt |
43128760 |
T |
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| Q |
120 |
ggtaaaaagttgacgtttatgctgtacatttttnnnnnnnnngtatgacataaactatatgtcaacggaacacgtttcaaacaatgtacatatatagtta |
219 |
Q |
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|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43128759 |
ggtaaaaagttgtcgtttatgctgtacatttttaaaaaaaaagt--gacataaactatatgtcaacggaacacgtttcaaacaatgtacatatatagtta |
43128662 |
T |
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| Q |
220 |
agatgaaaattacgttgtatatttaaaaataaacgtgtatgttcaacttaattttctacaacatgggtgtcataaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43128661 |
agatgaaaattacgttgtatatttaaaaataaacgtgtgtgttcaacttaattttctacaacatgggtgtcataaa |
43128586 |
T |
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