View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_6 (Length: 933)
Name: NF9026_low_6
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 702; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 18 - 785
Target Start/End: Complemental strand, 24562606 - 24561839
Alignment:
| Q |
18 |
catcaggaagaaaacaacactgtcctccacacgaggcattttccactgcagtgtactcataggagatttgtgaagcccattgagaatgtgcatgggaatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562606 |
catcaggaagaaaacaacactgtcctccacacgaggcattttccactgcagtgtactcataggagatttgtgaagcccattgagaatgtgcatgggaatt |
24562507 |
T |
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| Q |
118 |
atgtgtatcaagttaatcagtatctaaagagttgcctagcaaagagcaaccttgggtagttattaagacgtgtagggctgcgctttgtatggtcggtgtc |
217 |
Q |
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| T |
24562506 |
acgtgtatcaagttaatcagtatctaaagagttgcccagcaaagagcaaccttgggtagttattaagacgtgtagggctgcgctttgtatggtcggtgtc |
24562407 |
T |
|
| Q |
218 |
atttcttatgtggtcctttctgtttttgcaattgtgtatggtcgttttgtaactgttgtacttgaatccattttctttgctactatgtgtctgtaaattt |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562406 |
atttcttatgtggtcctttctgtttttgcaatcgtgtatggtcgttttgtaactgttgtacttgaatccattttctttgctactatgtgtctgtaaattt |
24562307 |
T |
|
| Q |
318 |
taatggacggcgtgtttgggtgcaattgtgtgcttatttgtttcatatgcttaagtgtggttgttttctaattgtgtgtggttgatgggttactaatagt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562306 |
taatggacggcgtgtttgggtgcaattgtgtgcttatttgtttcatatgcttaagtgtggttgttttctaattgtgtgtggttgatgggttactaatagt |
24562207 |
T |
|
| Q |
418 |
gcggctgatgttgcgcattggattgactatggatatgagagatctatgttttattttatttgtattctcttttggctcgataatttatgatattatgctt |
517 |
Q |
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| T |
24562206 |
gcggctgatgttgcgcattggattgactatggatatgagagatctatgttttattttatttgtattctcttttggctcgataatttatgatattatgctt |
24562107 |
T |
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| Q |
518 |
tactaacagaacatgactgtctcattagnnnnnnnnnagcttacagttttttgatttctcccatctttatgttttcatcagaaatcattgtatgaagtct |
617 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562106 |
tactaacagaacatgactgtctcattagtttttttttagcttacagttttttgatttctcccatctttatgttttcatcagaaatcattgtatgaagtct |
24562007 |
T |
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| Q |
618 |
gttttacgccaccgattttgaatgctcacgacagcgggggttgagtggggataacaaattgcatgtattttggttaagttaagttttagttgttacgtgt |
717 |
Q |
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| T |
24562006 |
gttttacgccaccgattttgaatgctcacgacagcgggggttgagtggggataacaaattgcatgtattttggttaagttaagttttagttgttacgtgt |
24561907 |
T |
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| Q |
718 |
gtaatagttcggcagatagaaataatctgcagaggnnnnnnnnngtacgtgtctgcattagcttccat |
785 |
Q |
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| T |
24561906 |
gtaatagttcggcagatagaaataatctgcagaggtttttttttgtacgtgtctgcattagcttccat |
24561839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 785 - 918
Target Start/End: Complemental strand, 24561781 - 24561648
Alignment:
| Q |
785 |
tagaatttggagttgttttggatgaaattaagaaatttgaaggcgattgaacccgacactctattttgaagtttgagaaagtgtgatgaagagactacca |
884 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24561781 |
tagaatttggagttgttttggatgaaattaagaaatttgaaggcgattgaacccgacaatctattttgaagtttgagaaagtgtgatgaagagactacca |
24561682 |
T |
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| Q |
885 |
ttggtttaagagatatcctattgaaagcatttga |
918 |
Q |
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| T |
24561681 |
ttggtttaagagatatcctattgaaagcatttga |
24561648 |
T |
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