View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9026_low_60 (Length: 249)
Name: NF9026_low_60
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39092403 - 39092636
Alignment:
| Q |
1 |
gttgatttggttttggtttgatgtgctaggaatgggttgttggtgaaaaagaaggcctgtttggatggtttcaagtggaaggaatcggagatcccatggt |
100 |
Q |
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| T |
39092403 |
gttgatttggttttggtttgatgtgctaggaatgggttgttggtgaaaaagaaggcctttttggatggtttcaagtggaaggaatcggagatcccatggt |
39092502 |
T |
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| Q |
101 |
gttaaattgattttctgataattacttgagttaagattgttgttgtcaattggtgcttgaactgttgttgtggatatcactttcatggaatccatgaaca |
200 |
Q |
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| T |
39092503 |
gttaaattgattttatgataattacttgagttaagattgttgttgtcaattggtgcttgaactgttgttgtggatatcactttcatggaatccatgaaca |
39092602 |
T |
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| Q |
201 |
acttttggtactctttcttttgggtagtttgatg |
234 |
Q |
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| T |
39092603 |
acttttggtactctttcttttgggtagtttgatg |
39092636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 39083384 - 39083542
Alignment:
| Q |
40 |
ttggtgaaaaagaaggcctgtttggatggtttcaagtggaaggaatcggagatcccatggtgttaaattgattttctgataattacttgagttaagattg |
139 |
Q |
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| T |
39083384 |
ttggtggaaaagaaggcctttttggatggtttcaagtgggagaaattgaagatcccatggtgttaattcgattatctgataatcagttgagttgagatta |
39083483 |
T |
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| Q |
140 |
ttgttgtcaattggtgcttgaactgttgttgtggatatcactttcatggaatccatgaa |
198 |
Q |
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| T |
39083484 |
ttgttgtcaattggtgcttgaacttttgttgtggatatcacactaatggaatccatgaa |
39083542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 39089033 - 39089197
Alignment:
| Q |
40 |
ttggtgaaaaagaaggcctgtttggatggtttcaagtggaaggaatcggagatcccatggtgttaaattgattttctgataattactt---gagttaaga |
136 |
Q |
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|||||| ||||||| |||| |||| |||||||||| | || ||| ||||||||||||||||||||| |||| | |||||| |||| ||||| ||| |
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| T |
39089033 |
ttggtggaaaagaatgcctttttgaatggtttcaactaagagaaattggagatcccatggtgttaaatcgattattcgataatcacttcttgagttgaga |
39089132 |
T |
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| Q |
137 |
ttgttgttgtcaattggtgcttgaactgttgttgtggatatcactttcatggaatccatgaacaa |
201 |
Q |
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| T |
39089133 |
ttattgtggtcaattggtgcttgaactgttgttgtggatatcactttgatggaagccatgaacaa |
39089197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 141
Target Start/End: Original strand, 39071922 - 39072024
Alignment:
| Q |
39 |
gttggtgaaaaagaaggcctgtttggatggtttcaagtggaaggaatcggagatcccatggtgttaaattgattttctgataattacttgagttaagatt |
138 |
Q |
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| T |
39071922 |
gttggtggaaaagatggcctctttggatggtttcaagtggaaggaattggagatcccatggtgttagatcaattttttcataatcacttgagttgagatt |
39072021 |
T |
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| Q |
139 |
gtt |
141 |
Q |
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||| |
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| T |
39072022 |
gtt |
39072024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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