View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9026_low_9 (Length: 604)
Name: NF9026_low_9
Description: NF9026
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9026_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0204 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 10 - 604
Target Start/End: Original strand, 37071133 - 37071727
Alignment:
| Q |
10 |
agatggacatcacgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctg |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071133 |
agatggccatcacgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctg |
37071232 |
T |
|
| Q |
110 |
gcattgtttttgtcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071233 |
gcattgtttttgtcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttc |
37071332 |
T |
|
| Q |
210 |
tgggtggaaacttgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggagatggggttcaaattcttggaatggca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071333 |
tgggtggaaacttgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggagatggggttcaaattcttggaatggca |
37071432 |
T |
|
| Q |
310 |
ggtgttactattgtttttgcagcacttggtttcatgtctccagcatcccgagggatgctactaactgggatgatcattttatatcttatccttggaattg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071433 |
ggtgttactattgtttttgcagcacttggtttcatgtctccagcatcccgagggatgctactaactgggatgatcattttatatcttatccttggaattg |
37071532 |
T |
|
| Q |
410 |
ccgctggctatgtcagcgtacgtctatggaggatcattaagggaacatcagaagggtggagatcagtttcttggtctgctgcatgnnnnnnncctggcat |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37071533 |
ccgctggctatgtcagcgtacgtctatggaggatcattaagggaacatcagaagggtggagatcagtttcttggtctgctgcatgtttttttcctggcat |
37071632 |
T |
|
| Q |
510 |
tgcttttgttatccttacagtactcaattttattctatggaacagcaacagtactggtgctatacctatttccttgtattttgagctgttcttcc |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37071633 |
tgcttttgttatccttacagtactcaattttattctatggaacagcaacagtactggtgctatacctatttccttgtattttgagctgttcttcc |
37071727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 590
Target Start/End: Complemental strand, 43219625 - 43219057
Alignment:
| Q |
22 |
cgttgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgtttttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||||||||||| || |||| || ||||| |||||||||| |
|
|
| T |
43219625 |
cgttgggatgcttatttgaagatggagggttcccgggtgcattggttctcgattctaaattcactgatggtgatcttttttctagctggtattgtttttg |
43219526 |
T |
|
| Q |
122 |
tcattttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaaact |
221 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
43219525 |
tcattttcttaagaacagtgagaagggacttggcaaggtatgaggaattggacaaagagacacaagctcagatgaatgaggagctttctggatggaagct |
43219426 |
T |
|
| Q |
222 |
tgttgtaggtgatgtatttagggagcctgaatgctcaaagcttctgtgtgtaatggttggagatggggttcaaattcttggaatggcaggtgttactatt |
321 |
Q |
| |
|
|||||| ||||||||||||||||| || | |||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||| |||||||| ||| |
|
|
| T |
43219425 |
tgttgtgggtgatgtatttagggaaccaggttgctcaaaactcctttgtgtgatggttggagacggggttcagattcttggcatggctggtgttacaatt |
43219326 |
T |
|
| Q |
322 |
gtttttgcagcacttggtttcatgtctccagcatcccgagggatgctactaactgggatgatcattttatatcttatccttggaattgccgctggctatg |
421 |
Q |
| |
|
|| || ||||| | ||||||||||| |||||||||||||| ||||| |||| || ||||| ||||| |||||| |||| || ||||| | || |||| |
|
|
| T |
43219325 |
gtgttcgcagccttgggtttcatgtcaccagcatcccgaggaatgctgttaacaggtatgataattttgtatcttttcctggggattgcttccggatatg |
43219226 |
T |
|
| Q |
422 |
tcagcgtacgtctatggaggatcattaagggaacatcagaagggtggagatcagtttcttggtctgctgcatgnnnnnnncctggcattgcttttgttat |
521 |
Q |
| |
|
| || |||||||| ||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||| || ||||| ||||||||| || |
|
|
| T |
43219225 |
taagtgtacgtctctggaggacaattaagggaacttcagaagggtggagatcgatttcctggtttgctgcttgctttttccctggaattgcttttacgat |
43219126 |
T |
|
| Q |
522 |
ccttacagtactcaattttattctatggaacagcaacagtactggtgctatacctatttccttgtattt |
590 |
Q |
| |
|
|| |||| ||| |||||| |||| ||| |||||||||||| ||||| | || |||||||||||||| |
|
|
| T |
43219125 |
tctaacagcactgaattttgttctttggggcagcaacagtacgggtgcacttcccatttccttgtattt |
43219057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 222 - 421
Alignment:
| Q |
25 |
tgggatgcttatttgaagatggagggttctcgagttcattggttctcaatcctaaattcactgatggttattattttccttgctggcattgtttttgtca |
124 |
Q |
| |
|
||||||||||| |||||||||||||| | ||| ||||||||||| ||||| ||||| ||||||| || | |||||||||||| |||||| |||| | |
|
|
| T |
222 |
tgggatgcttacttgaagatggagggagccaaagtccattggttctcgatcctcaattcgttgatggtgatcactttccttgctggtattgttcttgtta |
321 |
T |
|
| Q |
125 |
ttttcttaagaactgtaagaagggatttgacaaggtatgaggaattggacaaagaggcacaagctcagatgaacgaggagctttctgggtggaaacttgt |
224 |
Q |
| |
|
| ||||| |||||||| || |||||| || | || || ||||| | || || || || ||||| |||||||| |||||| | ||||| ||||| ||||| |
|
|
| T |
322 |
tcttcttgagaactgttaggagggatctggccagttacgaggagcttgataaggaagctcaagcacagatgaatgaggagttatctggttggaagcttgt |
421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University