View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9027_high_15 (Length: 277)
Name: NF9027_high_15
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 9585379 - 9585136
Alignment:
| Q |
17 |
cgtgtttgtatggcaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtagttaagagttacatttgcatagaagg |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9585379 |
cgtgtttgtatggtaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtaggtaagagttacatttgcatagaagg |
9585280 |
T |
|
| Q |
117 |
atgtagagagacacatacttctagccacttattttttgcatgcccgactgtaagaaaagtatggttcggaattgtgcattggctgggagtacagatggta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9585279 |
atgtagagagacacatacttctagccacttattttttgcatgcccgactgtaagaaaagtatggttcggaattgtgcattggctgggagtacagatggta |
9585180 |
T |
|
| Q |
217 |
tttcacattatgtgtaccatcccttattcccttttattaccttt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9585179 |
tttcacattatgtgtaccatcccttattcccttttattaccttt |
9585136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 32718420 - 32718637
Alignment:
| Q |
18 |
gtgtttgtatggcaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtagttaagagttacatttgcatagaagga |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| || |||||||||||| | |||||||| |||||||| |||| |
|
|
| T |
32718420 |
gtgtttgtatggcaggtaatgcaaaatcgtattccatccgaggacaatctatgtagaagaggaattataggtagggaggagttaca-ttgcataggagga |
32718518 |
T |
|
| Q |
118 |
tgtagagagacacatacttctagccacttattttttgcatgcccgactgtaagaaaagtatggttcggaattgtgcattggctgggagtacagatggtat |
217 |
Q |
| |
|
||| ||||| | | ||||| | ||||||||||||||| ||||||||||| |||||| |||||| |||||| ||| ||||| || |||||| |||| | |
|
|
| T |
32718519 |
tgtggagag--atagacttccaaccacttattttttgcttgcccgactgtctcaaaagtctggttcagaattgcgcaatggcttggtgtacaggtggtgt |
32718616 |
T |
|
| Q |
218 |
ttcacattatgtgtaccatcc |
238 |
Q |
| |
|
|||||| |||| ||||||||| |
|
|
| T |
32718617 |
ttcacaatatgagtaccatcc |
32718637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 9579727 - 9579634
Alignment:
| Q |
144 |
cttattttttgcatgcccgactgta--agaaaagtatggttcggaattgtgcattggctgggagtacagatggtatttcacattatgtgtaccatc |
237 |
Q |
| |
|
||||| |||||| ||||| |||||| | |||||||||||||||||||| |||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
9579727 |
cttatgttttgcttgcccaactgtatcaaaaaagtatggttcggaattgcgcattggctgggagtacaagtggtgtttcaca--atgtgtaccatc |
9579634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 9579828 - 9579740
Alignment:
| Q |
17 |
cgtgtttgtatggcaggtaatgcaaaattgtattccatcaaaggacaatttatgtagaaaagaaattataggtagttaagagttacatt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||| ||| | |||||||| || |||||||||||| | |||||||||| |
|
|
| T |
9579828 |
cgtgtttgtatggcaggtaatgcaaaatcgtattccacccaagcacagtccatgtagaagaggaattataggtagggatgagttacatt |
9579740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University