View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_high_2 (Length: 614)
Name: NF9027_high_2
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 183 - 599
Target Start/End: Complemental strand, 1217026 - 1216610
Alignment:
| Q |
183 |
aagcaaaaataagaaagtagttcataaatcaatacagttccaaaccaaatcttctacgcctcaataaaaagtctcattgttgcaaattaaggtcccatgc |
282 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1217026 |
aagcaaaaataagaaaatagttcataaatcaatacagttccaaaccaaatcttccacgcctcaataaaaagtctcattgttgcaaattaaggtcccatgc |
1216927 |
T |
|
| Q |
283 |
agctccaattctgataagcatattactaacctaacctcccatcttttatttctaccaaatacaaagcatgctaactgctaagatgacattaggtcccaat |
382 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1216926 |
agcaccaattctgataagcatattactaacctaacctcccatattttatttctaccaaatacaaagcatgctaactgctaagatgacattagggcccaat |
1216827 |
T |
|
| Q |
383 |
tgccttatcatgaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttcatgct |
482 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1216826 |
tgccttatcataaacagcaagccataatagatagcaaaaagaccaatttaaaggttgaaaatttgatattgatattacacacatctacatgcttcatgct |
1216727 |
T |
|
| Q |
483 |
tgtgttccaactatgtcaaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataaccctt |
582 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1216726 |
tgtgttccaactatgctaaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataaccctt |
1216627 |
T |
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| Q |
583 |
catttggaaccttctcc |
599 |
Q |
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| T |
1216626 |
catttggaaccttctcc |
1216610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 1217151 - 1217084
Alignment:
| Q |
55 |
actaaacctagcgcaaggagtagatatatcaaagtatacacatacatggagtcagtacatatatatct |
122 |
Q |
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| T |
1217151 |
actaaaccaagcgcaaggagtagatatatcaaagtatacacatacaaggagtcagtacatatatatct |
1217084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 499 - 599
Target Start/End: Complemental strand, 41103343 - 41103244
Alignment:
| Q |
499 |
caaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataacccttcatttggaaccttctc |
598 |
Q |
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| T |
41103343 |
caaactagcatattactgtgaattggcacgagaaagagactccacaaatctacttgtcaccatgatatccactgaataacccttca-ttggaaccatctc |
41103245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 586
Target Start/End: Complemental strand, 41088915 - 41088828
Alignment:
| Q |
499 |
caaactagcttaataccgagaattggcacaagaaagagactccacaaatctccttgccaccattatatccgttgaataacccttcatt |
586 |
Q |
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| T |
41088915 |
caaactagcataatactgcgaattggcacaagaaagagaccccataaatctccttaccaccatgatatcctctgaataacacttcatt |
41088828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 245
Target Start/End: Complemental strand, 41103799 - 41103704
Alignment:
| Q |
150 |
ttgacagaaacagaaacaccacacttctgaacaaagcaaaaataagaaagtagttcataaatcaatacagttcc-aaaccaaatcttctacgcctca |
245 |
Q |
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| T |
41103799 |
ttgacagaaattgaaacaacacacttctaaacaa-gcaaaaaccagaaaatagttcataatccaatacagttccaaaaccaaatcttctatgcctca |
41103704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 41089354 - 41089252
Alignment:
| Q |
224 |
aaaccaaatcttctacgcctcaataaaaagt-ctcattgttgcaaattaaggtcccatg----------cagctccaattctgataagcatattactaac |
312 |
Q |
| |
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||||||||||||||||||||||| ||||| | |||||| ||||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
41089354 |
aaaccaaatcttctacgcctcaacaaaaaattctcattcttgcatattaaggtcacatgaatcatgatgcagctccaattctcataagcatattactaac |
41089255 |
T |
|
| Q |
313 |
cta |
315 |
Q |
| |
|
||| |
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|
| T |
41089254 |
cta |
41089252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 1217210 - 1217172
Alignment:
| Q |
16 |
atagcaaaataaaattcaagcacacatctcatgttctta |
54 |
Q |
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| T |
1217210 |
atagcataataaaattcaagcacacatctcatgttctta |
1217172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 314
Target Start/End: Complemental strand, 41103675 - 41103641
Alignment:
| Q |
280 |
tgcagctccaattctgataagcatattactaacct |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
41103675 |
tgcagctccaattctgataagcatattactaacct |
41103641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 1217060 - 1217027
Alignment:
| Q |
108 |
agtacatatatatctaagaagaagaccgccaatt |
141 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1217060 |
agtacatatatatctaagaagaagaccgccaatt |
1217027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 532 - 579
Target Start/End: Complemental strand, 41080894 - 41080847
Alignment:
| Q |
532 |
aagagactccacaaatctccttgccaccattatatccgttgaataacc |
579 |
Q |
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| T |
41080894 |
aagagactccacaaatctcattgccaccatgatatcctctgaataacc |
41080847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 129 - 311
Target Start/End: Original strand, 4132117 - 4132306
Alignment:
| Q |
129 |
aagaccgccaattgcacttggttgacagaaacagaaacaccacacttctgaacaaagcaaaaataagaaagtagttcataaatcaatacagttccaaa-c |
227 |
Q |
| |
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||||| |||||||||||||||||| |||||| |||||||||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||||||||| | |
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|
| T |
4132117 |
aagactgccaattgcacttggttggcagaaagagaaacaccacacttccaaacaa-gcaaaaactagaaaatagttcataaaccaatacagttccaaaac |
4132215 |
T |
|
| Q |
228 |
caaatcttctacgcctcaataaaaagtctcattgttgcaaattaaggtcc-------catgcagctccaattctgataagcatattactaa |
311 |
Q |
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||||||||||||||||||| |||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| |||||||||| |
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| T |
4132216 |
caaatcttctacgcctcaacaaaaagtctcattgctgcatattgaggtcccatgaatcatgtagctccaattctgataagtatattactaa |
4132306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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