View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_high_3 (Length: 472)
Name: NF9027_high_3
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 11557895 - 11558329
Alignment:
| Q |
1 |
ttttccttgtaaattttatatttagcgaagttaatcaatattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaa |
100 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557895 |
ttttccttgtaaattttatatttagcgaatttaattaatattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaa |
11557994 |
T |
|
| Q |
101 |
gattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcattggtggggttaga |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11557995 |
gcttgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcctggtcaagtggaattgaaccatttaactcttgatagcattggtggggttaga |
11558094 |
T |
|
| Q |
201 |
gtctctattcgcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaag |
300 |
Q |
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| T |
11558095 |
gtctctattcgcgcaaccaccgacgatgatgcaagccagccaaatggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaag |
11558194 |
T |
|
| Q |
301 |
tttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11558195 |
tttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaac |
11558294 |
T |
|
| Q |
401 |
gttatctatatatagtctctgaattaaccaaaatt |
435 |
Q |
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| T |
11558295 |
gttatctatatatagtctctgaattaaccaaaatt |
11558329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 11544479 - 11544903
Alignment:
| Q |
1 |
ttttccttgtaaattttatatttagcgaagttaatcaatattatattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11544479 |
ttttccttgtaaattttatatttatctaaaataattaatattgtattgctaattattgttcagtgatccaaacacttgaagggaggaatagtgtgataaa |
11544578 |
T |
|
| Q |
101 |
gattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaattgaaccatttaactcttgatagcattggtggggttaga |
200 |
Q |
| |
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| ||||| | |||||||| || |||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
11544579 |
gcttgctcagagaatggtcaaaatgttttgtgaaagtttaacaatgcctggtcaattggaattgaaccatttaactcttgctagcattggtggtattaga |
11544678 |
T |
|
| Q |
201 |
gtctctattcgcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgctgctaccaccctttggctccctctgcctgctcagaaag |
300 |
Q |
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|||||| ||||| ||||| ||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
11544679 |
gtctcttttcgcagcaccacggacgatgatacaagccagccaaatggcactattgttactgcggctaccaccctttggctccctctgcctgctctgaaag |
11544778 |
T |
|
| Q |
301 |
tttttgaattcctcaaagatcctacaaaacgatcacaggtaacatgctttgttttataattgagagtaaattgtggttttggtccttggatatgtcaaac |
400 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||| | ||||||||||| ||||||||||| |
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| T |
11544779 |
tttttgaattcctcaaagatcctacaaagcgatcacaggtaacatcttttgctttataattgagagtaaactgtagctttggtccttgaatatgtcaaac |
11544878 |
T |
|
| Q |
401 |
gttatctatatatagtctctgaattaa |
427 |
Q |
| |
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|||||| ||||||||||||||||||| |
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|
| T |
11544879 |
gttatc--tatatagtctctgaattaa |
11544903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 64 - 338
Target Start/End: Complemental strand, 12064468 - 12064193
Alignment:
| Q |
64 |
tgatccaaacacttgaagggaggaatagtgtgataaagattgctgatagaatggtgaagatgttttgtgaatgcttaacaatgcatggtcaagtggaatt |
163 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12064468 |
tgatccaaacacttgaagggaggaatagtgtgataaagcttgctgatagaatggtcaaaatgttttgtgaatgcttaacaatgcctggtcaagtggaatt |
12064369 |
T |
|
| Q |
164 |
gaaccatttaactcttgatagcattggtgggg-ttagagtctctattcgcgcaaccaccgacgatgatgcaagccagccaaaaggcactgttgttactgc |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||| ||||||||||||| ||||||||||| ||||| |
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| T |
12064368 |
gaaccatttaactcttgatagcattggtggggtttagagtctctcttcgcgataccaccgacaatgatacaagccagccaaatggcactgttgtaactgc |
12064269 |
T |
|
| Q |
263 |
tgctaccaccctttggctccctctgcctgctcagaaagtttttgaattcctcaaagatcctacaaaacgatcacag |
338 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12064268 |
tgctaccactctttggctccctctgcctgctcagaaagtttttgaattgctcaaagatcctacaaaacgatcacag |
12064193 |
T |
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