View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9027_low_11 (Length: 456)

Name: NF9027_low_11
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9027_low_11
NF9027_low_11
[»] chr8 (22 HSPs)
chr8 (229-431)||(28069636-28069838)
chr8 (229-431)||(30426625-30426827)
chr8 (228-412)||(36991291-36991476)
chr8 (229-430)||(40695204-40695404)
chr8 (229-431)||(10652573-10652776)
chr8 (229-412)||(10672470-10672652)
chr8 (252-431)||(41511179-41511358)
chr8 (283-412)||(24101951-24102081)
chr8 (231-412)||(28318854-28319042)
chr8 (232-345)||(44859128-44859239)
chr8 (253-390)||(45113227-45113366)
chr8 (268-397)||(34612523-34612644)
chr8 (362-431)||(5033023-5033091)
chr8 (237-321)||(37966408-37966491)
chr8 (329-431)||(12177620-12177722)
chr8 (329-431)||(12422048-12422150)
chr8 (275-346)||(26749550-26749621)
chr8 (229-290)||(5033310-5033371)
chr8 (253-324)||(6014218-6014290)
chr8 (355-429)||(27490089-27490162)
chr8 (283-324)||(5033108-5033149)
chr8 (355-412)||(8412189-8412246)
[»] chr5 (23 HSPs)
chr5 (229-433)||(18625377-18625581)
chr5 (228-432)||(35660564-35660768)
chr5 (229-432)||(37266647-37266850)
chr5 (237-412)||(4895699-4895875)
chr5 (229-432)||(13032035-13032237)
chr5 (229-433)||(14349719-14349922)
chr5 (229-431)||(32129573-32129775)
chr5 (232-431)||(11775709-11775909)
chr5 (229-431)||(40753118-40753320)
chr5 (229-428)||(39902335-39902534)
chr5 (246-433)||(8440944-8441131)
chr5 (231-403)||(43309062-43309225)
chr5 (290-412)||(4592736-4592858)
chr5 (229-382)||(34827158-34827311)
chr5 (277-429)||(3057335-3057487)
chr5 (275-397)||(36290562-36290675)
chr5 (329-412)||(1475694-1475778)
chr5 (228-344)||(29340999-29341114)
chr5 (275-346)||(41660108-41660179)
chr5 (368-426)||(14733487-14733545)
chr5 (283-341)||(27428891-27428949)
chr5 (253-411)||(3057135-3057293)
chr5 (372-429)||(4348120-4348176)
[»] chr1 (22 HSPs)
chr1 (229-412)||(50294019-50294203)
chr1 (229-431)||(50484303-50484505)
chr1 (229-431)||(48327110-48327312)
chr1 (227-431)||(12151684-12151888)
chr1 (287-432)||(12380924-12381069)
chr1 (287-432)||(12384991-12385136)
chr1 (229-409)||(23861908-23862093)
chr1 (228-431)||(40328193-40328395)
chr1 (229-301)||(12380833-12380905)
chr1 (229-301)||(12384900-12384972)
chr1 (229-431)||(45977939-45978124)
chr1 (229-322)||(7840635-7840728)
chr1 (278-397)||(24977190-24977310)
chr1 (329-412)||(7841766-7841850)
chr1 (313-402)||(5047421-5047510)
chr1 (230-343)||(32361264-32361377)
chr1 (275-404)||(30077646-30077766)
chr1 (228-397)||(18976259-18976427)
chr1 (275-346)||(39426212-39426283)
chr1 (275-346)||(52280041-52280112)
chr1 (356-397)||(1609622-1609663)
chr1 (334-403)||(42720819-42720888)
[»] chr4 (32 HSPs)
chr4 (229-431)||(24073534-24073735)
chr4 (229-431)||(19901874-19902076)
chr4 (229-431)||(23610559-23610761)
chr4 (229-431)||(56558196-56558398)
chr4 (229-411)||(3952126-3952309)
chr4 (230-412)||(34778356-34778539)
chr4 (228-432)||(33247085-33247287)
chr4 (229-412)||(5763118-5763302)
chr4 (229-431)||(18206996-18207198)
chr4 (229-412)||(5416422-5416607)
chr4 (228-412)||(47922034-47922215)
chr4 (226-412)||(39862452-39862639)
chr4 (229-428)||(38079676-38079875)
chr4 (228-412)||(33262507-33262692)
chr4 (246-380)||(30567868-30568003)
chr4 (228-431)||(12153088-12153274)
chr4 (308-412)||(12241443-12241548)
chr4 (228-345)||(12312430-12312548)
chr4 (275-404)||(56269078-56269199)
chr4 (229-297)||(33524313-33524381)
chr4 (355-412)||(12312586-12312643)
chr4 (355-431)||(52018700-52018775)
chr4 (229-300)||(52018811-52018882)
chr4 (275-346)||(56453822-56453893)
chr4 (358-412)||(17080726-17080780)
chr4 (275-397)||(5524407-5524520)
chr4 (283-404)||(37002261-37002373)
chr4 (237-388)||(1871237-1871387)
chr4 (313-403)||(31862260-31862351)
chr4 (275-346)||(36688190-36688261)
chr4 (253-346)||(47922346-47922440)
chr4 (368-429)||(25442271-25442331)
[»] chr2 (22 HSPs)
chr2 (227-432)||(13238597-13238802)
chr2 (228-431)||(28564808-28565012)
chr2 (228-431)||(35316742-35316945)
chr2 (229-397)||(23259443-23259612)
chr2 (237-342)||(2063359-2063464)
chr2 (275-404)||(8988809-8988928)
chr2 (253-346)||(21454476-21454567)
chr2 (275-404)||(374946-375066)
chr2 (355-431)||(41983423-41983497)
chr2 (228-300)||(45625034-45625106)
chr2 (329-409)||(45625118-45625199)
chr2 (355-429)||(2061296-2061369)
chr2 (329-412)||(39465710-39465794)
chr2 (355-412)||(374521-374578)
chr2 (228-301)||(11864916-11864989)
chr2 (275-404)||(23459848-23459968)
chr2 (281-403)||(373172-373285)
chr2 (367-404)||(29188606-29188643)
chr2 (227-296)||(38824078-38824147)
chr2 (275-343)||(30709115-30709183)
chr2 (359-403)||(30824122-30824166)
chr2 (359-403)||(41073026-41073070)
[»] chr7 (29 HSPs)
chr7 (229-412)||(9559010-9559194)
chr7 (229-412)||(4888402-4888586)
chr7 (229-412)||(21151087-21151271)
chr7 (246-412)||(7362503-7362670)
chr7 (229-412)||(18198191-18198375)
chr7 (229-412)||(16366453-16366637)
chr7 (230-412)||(45260384-45260567)
chr7 (229-431)||(12139245-12139446)
chr7 (267-431)||(25084722-25084886)
chr7 (232-429)||(47226035-47226229)
chr7 (229-431)||(44647882-44648083)
chr7 (253-412)||(47500262-47500423)
chr7 (227-412)||(34985899-34986085)
chr7 (253-412)||(33450441-33450602)
chr7 (283-412)||(32915894-32916021)
chr7 (240-344)||(39855781-39855884)
chr7 (237-429)||(29630967-29631156)
chr7 (275-346)||(47799902-47799973)
chr7 (236-346)||(989131-989240)
chr7 (275-397)||(40023258-40023380)
chr7 (283-404)||(19889044-19889156)
chr7 (317-402)||(40019626-40019712)
chr7 (283-403)||(30588489-30588600)
chr7 (283-346)||(32916171-32916234)
chr7 (370-429)||(41271791-41271849)
chr7 (232-299)||(47271107-47271173)
chr7 (246-346)||(33608850-33608950)
chr7 (348-412)||(33683238-33683303)
chr7 (278-346)||(46802336-46802404)
[»] chr6 (20 HSPs)
chr6 (229-407)||(17944102-17944281)
chr6 (230-431)||(1249105-1249304)
chr6 (229-431)||(4804365-4804567)
chr6 (232-431)||(27826455-27826654)
chr6 (253-431)||(7162001-7162179)
chr6 (246-402)||(12412582-12412739)
chr6 (229-397)||(21159325-21159494)
chr6 (227-345)||(13089703-13089821)
chr6 (291-431)||(29698080-29698220)
chr6 (275-397)||(24484839-24484952)
chr6 (246-397)||(30460770-30460925)
chr6 (329-431)||(32737791-32737893)
chr6 (229-306)||(32737899-32737976)
chr6 (232-412)||(227522-227704)
chr6 (275-346)||(2800613-2800684)
chr6 (350-396)||(17398772-17398818)
chr6 (275-344)||(7215854-7215923)
chr6 (246-306)||(1516180-1516239)
chr6 (246-306)||(1518269-1518328)
chr6 (237-293)||(10203537-10203592)
[»] chr3 (22 HSPs)
chr3 (229-431)||(19830387-19830591)
chr3 (229-433)||(43719903-43720107)
chr3 (231-431)||(40851690-40851891)
chr3 (229-412)||(2229918-2230102)
chr3 (253-407)||(27033591-27033746)
chr3 (232-412)||(46167328-46167509)
chr3 (229-409)||(34373769-34373950)
chr3 (247-412)||(34373559-34373725)
chr3 (243-429)||(550787-550972)
chr3 (228-324)||(24754681-24754777)
chr3 (228-324)||(24763678-24763774)
chr3 (228-412)||(48084754-48084940)
chr3 (253-412)||(12402900-12403061)
chr3 (275-404)||(31523670-31523790)
chr3 (228-402)||(29586282-29586455)
chr3 (278-397)||(2310261-2310379)
chr3 (246-398)||(566747-566899)
chr3 (283-404)||(42613033-42613145)
chr3 (275-404)||(49679272-49679392)
chr3 (367-404)||(3009192-3009229)
chr3 (368-397)||(4699038-4699067)
chr3 (229-281)||(24647905-24647957)
[»] scaffold0012 (1 HSPs)
scaffold0012 (229-431)||(207980-208182)
[»] scaffold0008 (1 HSPs)
scaffold0008 (229-426)||(9157-9351)
[»] scaffold0035 (1 HSPs)
scaffold0035 (229-412)||(16353-16537)
[»] scaffold0250 (1 HSPs)
scaffold0250 (228-431)||(7064-7271)
[»] scaffold0126 (1 HSPs)
scaffold0126 (237-412)||(22407-22582)
[»] scaffold0009 (1 HSPs)
scaffold0009 (237-396)||(6399-6559)
[»] scaffold0006 (2 HSPs)
scaffold0006 (333-412)||(73900-73980)
scaffold0006 (237-311)||(73821-73895)
[»] scaffold0456 (2 HSPs)
scaffold0456 (329-402)||(13641-13715)
scaffold0456 (229-298)||(13730-13799)
[»] scaffold0171 (1 HSPs)
scaffold0171 (278-397)||(17311-17421)
[»] scaffold0712 (1 HSPs)
scaffold0712 (367-403)||(3139-3175)
[»] scaffold0709 (1 HSPs)
scaffold0709 (367-403)||(3159-3195)


Alignment Details
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 28069838 - 28069636
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||| |||| |||||||||||| ||     
T  28069838 gggtgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtc 28069739  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    ||||||||||||||||| | || ||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||     
T  28069738 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgaaaaacacat-aaatggagaggatcttc 28069640  T
Q  428 accc 431  Q
    ||||    
T  28069639 accc 28069636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 30426625 - 30426827
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| | |||||  |||||||||||||||||| | |||| |||||||||| ||||||||||||||||||| |||| |||| |||||||||||| ||     
T  30426625 gggtgaagaccctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtc 30426724  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| || |||||||| ||| |||||||||| |    
T  30426725 ccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacat-aaatggagaggatcct 30426822  T
Q  427 aaccc 431  Q
    |||||    
T  30426823 aaccc 30426827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 228 - 412
Target Start/End: Complemental strand, 36991476 - 36991291
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||| || |||||| || | |||| |||||||||||| ||    
T  36991476 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggt 36991377  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
     ||||||||||||||||| ||||   || ||||||||||| | ||||||||||||||| |||| |||||||| ||||||||||||||    
T  36991376 cccaccatcattaattat-atttgacttttttcaagattttacgtgtctttatctctccaaattgaagaaatggagaaacacataaa 36991291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 229 - 430
Target Start/End: Original strand, 40695204 - 40695404
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||| |||  |||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||     
T  40695204 gggtgaagatcttctccatttagcaaaataaatggag-tttggaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtgagtt 40695302  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||| ||| ||||||  || ||||||||||| |||| |||||||| ||| |||| |||||||| || ||| ||||||| ||| ||||||| |    
T  40695303 ccaccatcattagtta-tattttacttttttcaagattttatgtttctttatccctccaaattgaagaaatggataaatacataaatagg-gaggatcct 40695400  T
Q  427 aacc 430  Q
    ||||    
T  40695401 aacc 40695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 10652573 - 10652776
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||| ||||||||||| | |||| |||||||||| ||||||| ||||||||| | |||| |||||||| ||||| || ||     
T  10652573 gggtgaagatcctctccatttggtaaaataaatggtgttttgcaagttggagagagatagatacaaaaaattgatggtgggtcatactactaattgggtc 10652672  T
Q  329 ccaccatcattaattattattt---tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
    |||||||||||||||||  |||   ||| |||||| |||| |||||| |||||||||| |||| ||||||||  |||||||||| ||| |||||||||||    
T  10652673 ccaccatcattaattatatttttactttttttcaaaattttatgtgt-tttatctctccaaattgaagaaatgaagaaacacat-aaatggagaggatct 10652770  T
Q  426 taaccc 431  Q
    ||||||    
T  10652771 taaccc 10652776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 10672470 - 10672652
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| || ||||  |||||||||||||||||||| |||| ||||||||||  |||||||||||||||||| |||| | || |||||||||||||||     
T  10672470 gggtgaagattctctccatttggcaaaataaatggagttttgcaagttggaga--gatagacacaaaaaatagatggtggatcctaccactaagtgagtc 10672567  T
Q  329 ccaccatcattaattattattttttc--tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||| ||||||  |  ||| || |||| |||| | |||||||||| |||| ||| ||||  |||||||||||||    
T  10672568 ccaccatcattaatta-tattttaccctttttaaaattttatgtatttttatctctccaaattgaataaatgaagaaacacataaa 10672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 431
Target Start/End: Complemental strand, 41511358 - 41511179
Alignment:
Q  252 caaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt 351  Q
    |||||||||||||| |||| |||||||| | ||||||| | ||||||||| | || |||| || |||||||||  | |||||||||||||||| ||||||    
T  41511358 caaaataaatggagttttgcaagttggaaagagatagatataaaaaatagatagtgggtcctatcactaagtggtttccaccatcattaatta-tatttt 41511260  T
Q  352 --ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
      || ||||||||||| |||||| |||||||||| |||| |||||||| || |||||||| ||| |||||||||| ||||||    
T  41511259 acttttttcaagattttatgtgtttttatctctccaaattgaagaaatggaaaaacacat-aaatggagaggatcctaaccc 41511179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 24102081 - 24101951
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt--tttctttcaagatttgatgtgtctttatct 380  Q
    ||||||||| ||||||||| |||| | || ||||||||||||||| |||||||||||||||| |||||  ||| ||||||||||| | ||||||||||||    
T  24102081 agatagacataaaaaatagatggtggatcctaccactaagtgagttccaccatcattaatta-tatttcatttttttcaagattttacgtgtctttatct 24101983  T
Q  381 ctctaaatggaagaaattgagaaacacataaa 412  Q
    ||| ||||  || |||| || |||||||||||    
T  24101982 ctccaaattaaaaaaatagaaaaacacataaa 24101951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 412
Target Start/End: Original strand, 28318854 - 28319042
Alignment:
Q  231 gtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaata------gttggtaggtcataccactaagtg 324  Q
    ||||| ||| ||||||||||| ||||||||||||| |||| ||||| |||| ||||| ||| ||||||||      | | || |||| ||||||||||||    
T  28318854 gtgaagatcttctttatttggtaaaataaatggagttttgcaagtttgagagagatatacaaaaaaaataaaaaaagatagtgggtcctaccactaagtg 28318953  T
Q  325 agtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
     || | |||||||||||||| ||||||  || ||| || |||| |||||||||| |||||| |||| |||||||| ||||||||| ||||    
T  28318954 ggtccaaccatcattaatta-tattttactttttttaaaattttatgtgtctttgtctctccaaattgaagaaatggagaaacacgtaaa 28319042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 44859128 - 44859239
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacca 331  Q
    |||| ||||||| |||||| |||||||||||||| |||| ||||| |||| ||||||  || |||||||| |||| |||  |||||||||||| || |||    
T  44859128 tgaagatcctctctatttgacaaaataaatggagttttgcaagttagagagagatag--actaaaaatagatggtgggttctaccactaagtgggtccca 44859225  T
Q  332 ccatcattaattat 345  Q
    ||||||||||||||    
T  44859226 ccatcattaattat 44859239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 390
Target Start/End: Complemental strand, 45113366 - 45113227
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt- 350  Q
    ||||||||| | | |||| || ||||||| | |||||||||||| ||||| |||| ||||  ||||||||||| || ||| |||||||||||||| |||     
T  45113366 aaaataaattgtgttttgcaatttggagagacatagacacaaaagaatagatggtgggtccaaccactaagtgtgtcccatcatcattaattatttttta 45113267  T
Q  351 tttctttcaagatttgatgtgtctttatctctctaaatgg 390  Q
    ||| |||||| |||| |||||||| |||||||| ||||||    
T  45113266 tttttttcaaaattttatgtgtctatatctctccaaatgg 45113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 397
Target Start/End: Complemental strand, 34612644 - 34612523
Alignment:
Q  268 ttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttga 367  Q
    |||||| || |||| ||||||||||||||||||  |||| |||| || ||||||||| ||  ||||||||||||||||| ||||| ||       ||| |    
T  34612644 ttgtaatttagagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatt-tttttact-------tttta 34612553  T
Q  368 tgtgtctttatctctctaaatggaagaaat 397  Q
    ||||||||||||||||||||||||| ||||    
T  34612552 tgtgtctttatctctctaaatggaacaaat 34612523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 431
Target Start/End: Complemental strand, 5033091 - 5033023
Alignment:
Q  362 atttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
    |||| ||||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||||||||||    
T  5033091 attttatgtgtctttatctctccaaattgaagaaatggagaaacatat-aaatggagaggatcttaaccc 5033023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 37966408 - 37966491
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaa 321  Q
    |||||||  ||||||||||||||||||| ||||| || ||| ||| ||||| ||||||||||||| | ||||||| |||||||||    
T  37966408 atcctctccatttggcaaaataaatgga-atttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctaccactaa 37966491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 12177620 - 12177722
Alignment:
Q  329 ccaccatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    |||||||||||| ||||  ||| ||| ||||||||||| |  |||| |||||||| ||||| |||||||| |||||||||||||| | ||||||||| ||    
T  12177620 ccaccatcattagttatattttatttttttcaagattttaattgtccttatctctttaaattgaagaaatggagaaacacataaata-gagaggatccta 12177718  T
Q  428 accc 431  Q
    ||||    
T  12177719 accc 12177722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 431
Target Start/End: Original strand, 12422048 - 12422150
Alignment:
Q  329 ccaccatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    |||||||||||| ||||  ||| ||| ||||||||||| |  |||| |||||||| ||||| |||||||| |||||||||||||| | ||||||||| ||    
T  12422048 ccaccatcattagttatattttatttttttcaagattttaattgtccttatctctttaaattgaagaaatggagaaacacataaata-gagaggatccta 12422146  T
Q  428 accc 431  Q
    ||||    
T  12422147 accc 12422150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 26749550 - 26749621
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||||||||||  || | |||| || ||||||||| || ||||||||||||||||||    
T  26749550 ttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatt 26749621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 5033371 - 5033310
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagac 290  Q
    ||||||| ||||| |  |||||||||||||||||||| |||| |||||||||| ||||||||    
T  5033371 gggtgaagatcctttccatttggcaaaataaatggagttttgcaagttggagagagatagac 5033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 6014290 - 6014218
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtg 324  Q
    ||||||||| ||| |||| || |||||||||||||||||||||| ||||| || |||||| ||||| ||||||    
T  6014290 aaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtg 6014218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 27490089 - 27490162
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    ||||||||||| |||| | ||| |||||  |||||||||||||||||||| |||| ||| ||||| |||||||||    
T  27490089 tttcaagattttatgtatttttgtctcttcaaatggaagaaattgagaaagacat-aaatggagaagatcttaac 27490162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 5033149 - 5033108
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtg 324  Q
    ||||||||||||||||||| |||| |||| ||||||||||||    
T  5033149 agatagacacaaaaaatagatggtgggtcctaccactaagtg 5033108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 8412246 - 8412189
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||| |||| |||||| ||||||||||||||||||| ||||  ||||| |||||||    
T  8412246 tttcaatattttatgtgtatttatctctctaaatggaaaaaatgaagaaaaacataaa 8412189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 229 - 433
Target Start/End: Original strand, 18625377 - 18625581
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||| |||| |||||||||||| ||     
T  18625377 gggtgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtc 18625476  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    ||||||||||||||||| | || ||| ||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||| ||| ||||||||||||     
T  18625477 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatgaaagaaattgaaaaacacat-aaatggagaggatcttc 18625575  T
Q  428 acccgg 433  Q
    ||||||    
T  18625576 acccgg 18625581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 35660564 - 35660768
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||| |||||||||||| ||    
T  35660564 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 35660663  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
     |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||  |||||||||||||| | ||||||||||    
T  35660664 cccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaacggagaaacacataaata-gagaggatct 35660761  T
Q  426 taacccg 432  Q
    |||||||    
T  35660762 taacccg 35660768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 229 - 432
Target Start/End: Complemental strand, 37266850 - 37266647
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||     
T  37266850 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtc 37266751  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| || |||||| | ||| |||||||||| |    
T  37266750 ccaccatcattaatta-tattttagttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacgt-aaatggagaggatcct 37266653  T
Q  427 aacccg 432  Q
    ||||||    
T  37266652 aacccg 37266647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 237 - 412
Target Start/End: Original strand, 4895699 - 4895875
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatc 336  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||| |||||||||||| || ||||||||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatc 4895798  T
Q  337 attaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| |||||    
T  4895799 attaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaa 4895875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 229 - 432
Target Start/End: Complemental strand, 13032237 - 13032035
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||||||| |||||| ||||  ||| ||||||||| || ||     
T  13032237 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtc 13032138  T
Q  329 ccaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaa 428  Q
    |||||||||||||||||  ||| || ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||| |||    
T  13032137 ccaccatcattaattatattttatttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcctaa 13032039  T
Q  429 cccg 432  Q
    ||||    
T  13032038 cccg 13032035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 229 - 433
Target Start/End: Complemental strand, 14349922 - 14349719
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||| |||| |||| |||||||||||| ||     
T  14349922 gggtgaagatcctctctatttggtaaaataaatggagttttgtaagttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtc 14349823  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||||||||||| |||||||||||||| || ||||  ||||||| ||||||||||| ||| ||||| ||||||    
T  14349822 ccaccatcattaatta-tattttacttttttcaagattt-atgtgtctttatctttccaaattaaagaaatggagaaacacat-aaatggagaagatctt 14349726  T
Q  427 aacccgg 433  Q
    |||||||    
T  14349725 aacccgg 14349719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 32129573 - 32129775
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||| |||| |||| |||||||||||| ||     
T  32129573 gggtgaagatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtc 32129672  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||| |    
T  32129673 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatat-aaatggagaggatcct 32129770  T
Q  427 aaccc 431  Q
    |||||    
T  32129771 aaccc 32129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 11775909 - 11775709
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacca 331  Q
    |||| |||||||  |||||| ||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| | || |||||||||||| || |||    
T  11775909 tgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtccca 11775810  T
Q  332 ccatcattaattattattt--tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    || |||||||||||  |||  ||| ||||||||||| |||||| |||||||||| |||| |||||||| ||||||||||| ||| |||||||||||||||    
T  11775809 ccgtcattaattatattttactttttttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcttaac 11775711  T
Q  430 cc 431  Q
    ||    
T  11775710 cc 11775709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 40753118 - 40753320
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||||||| |||||||||||||||||  || |||| |||||||||||||||||||||||||||||  |||| |||| |||||||||||| ||     
T  40753118 gggtgaagatcctctctatttggcaaaataaataaagttttgcaagttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtc 40753217  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||||||||||| |||||  |||||||||| ||||  ||||||| ||||| ||||| ||| |||||||||| |    
T  40753218 ccaccatcattaatta-tattttacttttttcaagattttatgtgcttttatctctccaaattaaagaaatggagaagcacat-aaatggagaggatcct 40753315  T
Q  427 aaccc 431  Q
    |||||    
T  40753316 aaccc 40753320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 229 - 428
Target Start/End: Complemental strand, 39902534 - 39902335
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    |||||||  ||||||  ||||| |||||||||||||| |||  |||||||||| ||||| |||||| |||||| |||| |||| ||||||||| ||  |     
T  39902534 gggtgaagttcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctaccactaaatggatt 39902435  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||||||||    
T  39902434 ccaccatcattaatta-tattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatctt 39902337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 433
Target Start/End: Original strand, 8440944 - 8441131
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattat 345  Q
    |||||||||||||||||||| |||| |||||||||  |||||||||| |||||||| ||||  | |||||||||||||| || ||||||||||||||||     
T  8440944 atttggcaaaataaatggagttttgcaagttggaggtagatagacaccaaaaatagatggtgcgacataccactaagtgtgtcccaccatcattaatta- 8441042  T
Q  346 tatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaacccgg 433  Q
    ||||||  || ||| ||||||  |||||| |||||||||| |||| || ||||  ||||||||||| ||| ||||| |||| ||||||||    
T  8441043 tattttactttttttaagattgtatgtgtatttatctctccaaattgatgaaacggagaaacacat-aaatggagatgatcctaacccgg 8441131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 403
Target Start/End: Complemental strand, 43309225 - 43309062
Alignment:
Q  231 gtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacc 330  Q
    ||||| ||||||||||||||  ||||||||||||| |||| |||||||||| ||||||||| ||||||||| | || | || ||||| ||| || || ||    
T  43309225 gtgaagatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggttcc 43309126  T
Q  331 accatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    |||||||||||         ||| ||||||||||| ||||||||||||||||  |||| |||||||| |||||    
T  43309125 accatcattaa---------tttttttcaagattttatgtgtctttatctcttcaaattgaagaaatggagaa 43309062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 412
Target Start/End: Complemental strand, 4592858 - 4592736
Alignment:
Q  290 cacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaa 387  Q
    |||||||||||| |||| |||| |||||||||||| || |||||||||||||||| ||||||  || |||||| |||| ||||||  ||||||||| |||    
T  4592858 cacaaaaaatagatggtgggtcttaccactaagtgggtcccaccatcattaatta-tattttacttttttcaatattttatgtgt-attatctctccaaa 4592761  T
Q  388 tggaagaaattgagaaacacataaa 412  Q
    | |||||||| ||||||||||||||    
T  4592760 ttgaagaaatggagaaacacataaa 4592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 382
Target Start/End: Complemental strand, 34827311 - 34827158
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||| |||  |||| ||||||||||||||| | || |||||||||| ||||||||| ||||||||| |||| | || |||||||||||| ||     
T  34827311 gggtgaagatcatctccatttagcaaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtc 34827212  T
Q  329 ccaccatcattaattattattt--tttctttcaagatttgatgtgtctttatctct 382  Q
    |||||||| ||||||||  |||  ||| |||||| ||||  |||||||||||||||    
T  34827211 ccaccatctttaattatattttactttttttcaaaattt--tgtgtctttatctct 34827158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 429
Target Start/End: Complemental strand, 3057487 - 3057335
Alignment:
Q  277 ggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt-ttctttcaagatttgatgtgtctt 375  Q
    ||||| ||||||||| |||||| || || | | || |||||| |||||||| ||| |||||||||||||| | |  || ||||||  |||  ||||||||    
T  3057487 ggagagagatagacaaaaaaaaaagatgatggatcctaccacaaagtgagttccatcatcattaattattttatacttttttcaaacttttttgtgtctt 3057388  T
Q  376 tatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||| |||||||||||| ||||| | |||| ||| ||||| |||||||||    
T  3057387 tatctctcaaaatggaagaaagtgagagaaacat-aaatggagatgatcttaac 3057335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 36290675 - 36290562
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||| || |||||||||  | |||||||||||||||||  ||||| ||       ||| ||||||||    
T  36290675 ttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattat--tttttact-------ttttatgtgtct 36290585  T
Q  375 ttatctctctaaatggaagaaat 397  Q
    |||||||||||||||||| ||||    
T  36290584 ttatctctctaaatggaacaaat 36290562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 1475694 - 1475778
Alignment:
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| |||||  || ||||||||||| ||||||||||||| ||| |||| ||||||||  | |||||||||||    
T  1475694 ccaccatcattaattat-attttacttttttcaagattttatgtgtctttatcactccaaattgaagaaatgaaaaaacacataaa 1475778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 344
Target Start/End: Complemental strand, 29341114 - 29340999
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    ||||| || |||||||  |||||| | ||||||||||| | || || ||||||| ||||||||||| ||||||| | || |||| ||| | |||||| ||    
T  29341114 cgggtaaagatcctctccatttggtataataaatggag-tatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggt 29341016  T
Q  328 accaccatcattaatta 344  Q
     ||||||||||||||||    
T  29341015 cccaccatcattaatta 29340999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 41660179 - 41660108
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||||||||||  |||| ||||  | ||||| ||| || ||||||||||||||||||    
T  41660179 ttggagagagatagacacaaaaaataagtggtgggtctcatcactaggtgggtcccaccatcattaattatt 41660108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 426
Target Start/End: Complemental strand, 14733545 - 14733487
Alignment:
Q  368 tgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||||||||||||| |||||||||||||||| |||||| | || ||| | ||||||||||    
T  14733545 tgtgtctttatctttctaaatggaagaaatggagaaaaaaattaaatgaagaggatctt 14733487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 27428891 - 27428949
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaa 341  Q
    ||||||||||||||||||| ||||   || ||||| ||||||||| |||||||||||||    
T  27428891 agatagacacaaaaaatagatggtgaatcctaccattaagtgagttccaccatcattaa 27428949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 3057135 - 3057293
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt- 351  Q
    |||||||||||| ||||| || ||||| | ||||| ||||||||||||| |||| | || ||||| |||||||||  ||  ||||||||||| ||||||     
T  3057135 aaaataaatgga-atttgcaatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtgagtcacataatcattaatta-tatttta 3057232  T
Q  352 -ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataa 411  Q
     || ||| || | || | ||||||||||||||  |||| |||||||| |||| | ||||||    
T  3057233 cttttttaaaaaatttaagtgtctttatctcttcaaatagaagaaatggagagagacataa 3057293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 4348120 - 4348176
Alignment:
Q  372 tctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||||||| ||||| || ||||||||||| ||||||| | ||||||||||||||    
T  4348120 tctttatctctccaaatgtaacaaattgagaaagacataaata-gagaggatcttaac 4348176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 50294019 - 50294203
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||| ||||||||||||  |     
T  50294019 gggtgaagatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggatc 50294118  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    | ||||||||||||||| | || ||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  50294119 ctaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaa 50294203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 50484505 - 50484303
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||   ||||||||||| ||     
T  50484505 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtc 50484406  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||||| |||||||||| ||||||  || ||||||||||| ||||||||||||||||| ||||  ||||||| ||||||||||| ||| ||||||||||||    
T  50484405 ccaccgtcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattaaagaaatggagaaacacat-aaatggagaggatctt 50484308  T
Q  427 aaccc 431  Q
    |||||    
T  50484307 aaccc 50484303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 48327110 - 48327312
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||  ||| |||||||||||| ||     
T  48327110 gggtgaagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggt- 48327208  T
Q  329 ccaccatcattaat--tattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||||||||||||||  |||| | |||| ||||||||||| ||||  |||||| |||| |||||||||||||||| |||||||| ||| ||||||||||||    
T  48327209 ccaccatcattaattatattttattttttttcaagattttatgtacctttatatctccaaatggaagaaattgataaacacat-aaatggagaggatctt 48327307  T
Q  427 aaccc 431  Q
    |||||    
T  48327308 aaccc 48327312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 431
Target Start/End: Complemental strand, 12151888 - 12151684
Alignment:
Q  227 tcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgag 326  Q
    ||||||||| ||| |||  |||||||||||||||||||| ||||  ||||||||| ||| ||||||||||||||| | || |||| |||||||||||| |    
T  12151888 tcgggtgaagatcttctccatttggcaaaataaatggagttttgccagttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtggg 12151789  T
Q  327 taccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatc 424  Q
    | |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| ||| |||| ||||||||||| ||| || |||||||    
T  12151788 tcccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaataaatggagaaacacat-aaatggggaggatc 12151691  T
Q  425 ttaaccc 431  Q
    |||||||    
T  12151690 ttaaccc 12151684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 12380924 - 12381069
Alignment:
Q  287 agacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctct 384  Q
    ||||||||||||||| |||| |||  ||||||||||||||| ||||||||||||||||| |||||  || ||||||||||| |||||||||||||||||     
T  12380924 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctcc 12381022  T
Q  385 aaatggaagaaattgagaaacacataaaaaggagaggatcttaacccg 432  Q
    |||| |||||||| ||||||||||| ||| |||||||||| |||||||    
T  12381023 aaattgaagaaatggagaaacacat-aaatggagaggatcctaacccg 12381069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 12384991 - 12385136
Alignment:
Q  287 agacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctct 384  Q
    ||||||||||||||| |||| |||  ||||||||||||||| ||||||||||||||||| |||||  || ||||||||||| |||||||||||||||||     
T  12384991 agacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctcc 12385089  T
Q  385 aaatggaagaaattgagaaacacataaaaaggagaggatcttaacccg 432  Q
    |||| |||||||| ||||||||||| ||| |||||||||| |||||||    
T  12385090 aaattgaagaaatggagaaacacat-aaatggagaggatcctaacccg 12385136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 229 - 409
Target Start/End: Original strand, 23861908 - 23862093
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtag---gtcataccactaagtga 325  Q
    ||||||| ||||||| ||||| |||||||||||| || |||| |||||||||| ||||||||||||||||||| |||| |    || ||||||||||||     
T  23861908 gggtgaatatcctctctatttagcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtggtgaatcctaccactaagtgg 23862007  T
Q  326 gtaccaccatcattaat--tattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacat 409  Q
     | ||||||||||||||  |||| | |||| ||||||||||| |||||||||||||| || |||| |||||||| |||||||||||    
T  23862008 atcccaccatcattaattatattttattttttttcaagattttatgtgtctttatctttccaaattgaagaaatagagaaacacat 23862093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 228 - 431
Target Start/End: Complemental strand, 40328395 - 40328193
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||| ||| |||||||  |||||||||||||||||||| |||| || ||||||  |||||||||| |||||||| |||| ||||  ||||||||||| ||    
T  40328395 cgggcgaagatcctctccatttggcaaaataaatggagttttgcaaattggag--agatagacac-aaaaatagatggtgggtcccaccactaagtgggt 40328299  T
Q  328 accaccatcattaattattattt--tttctttcaagatttgatgtgtc-tttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatc 424  Q
     |||||||||||| ||||  |||  ||| ||||||||||| ||||||| |||||||||| ||||  |||||||  |||||||||| ||| | ||||||||    
T  40328298 tccaccatcattagttatattttactttttttcaagattttatgtgtcttttatctctccaaattaaagaaatgaagaaacacat-aaatgaagaggatc 40328200  T
Q  425 ttaaccc 431  Q
    |||||||    
T  40328199 ttaaccc 40328193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 12380833 - 12380905
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatag 301  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  12380833 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatag 12380905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 12384900 - 12384972
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatag 301  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  12384900 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatag 12384972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 45978124 - 45977939
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||||||| ||||||  ||||||||||||| |||| |||||||||| ||||||| ||||||||||| |||| ||||                     
T  45978124 gggtgaagatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtc----------------- 45978042  T
Q  329 ccaccatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    ||| |||| ||||||||  ||| ||| ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||| ||    
T  45978041 ccagcatcgttaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatccta 45977943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 7840635 - 7840728
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaag 322  Q
    ||||||| ||||| || |||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||| || | |||| ||||| ||||    
T  7840635 gggtgaagatcctattcatttggcagaataaatggagttttgtaagttggagagagatagacacaagaaatagatgatgggtcctaccattaag 7840728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 24977310 - 24977190
Alignment:
Q  278 gagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaat--tattattttttctttcaagatttgatgtgtctt 375  Q
    |||| ||||||||||||||||||| |||| | || |||||||||||| || |||| ||||||| |  |||| | |||| ||||||||||| || ||| ||    
T  24977310 gagagagatagacacaaaaaatagatggtggatcctaccactaagtgggttccacaatcattagttatattttattttttttcaagattttat-tgtatt 24977212  T
Q  376 tatctctctaaatggaagaaat 397  Q
    |||||||||||||| |||||||    
T  24977211 tatctctctaaatgtaagaaat 24977190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 7841766 - 7841850
Alignment:
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| |||||  || ||||||||||| ||||||||||||||||| |||| |||||||| || ||||| |||||    
T  7841766 ccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaa 7841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 5047421 - 5047510
Alignment:
Q  313 taccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgaga 402  Q
    |||||||| ||| || |||||||||||||||||| | | || ||||||  |||  |||| ||||||||||||||||||||||||| ||||    
T  5047421 taccactatgtgggtcccaccatcattaattattttatattttttcaaacttttttgtgcctttatctctctaaatggaagaaatggaga 5047510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 32361264 - 32361377
Alignment:
Q  230 ggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtac 329  Q
    ||||||||||||||  ||||||  |||||| | ||| ||||||||||||||| |||| ||||||||| |||| |||| | || ||| |||||||  || |    
T  32361264 ggtgaaaatcctctccatttggtgaaataattagagttttgtaagttggagagagatggacacaaaagatagatggtggatcctactactaagtaggtcc 32361363  T
Q  330 caccatcattaatt 343  Q
    || |||||||||||    
T  32361364 catcatcattaatt 32361377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 30077646 - 30077766
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||  || |||||||||||| |||| ||||||||||||  ||||| ||       ||| ||||||||    
T  30077646 ttggagagagatagacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattat--tttttact-------ttttatgtgtct 30077736  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||| ||||||||||||| |||| ||||||    
T  30077737 ttatttctctaaatggaacaaatagagaaa 30077766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 397
Target Start/End: Original strand, 18976259 - 18976427
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgag 326  Q
    ||||| || |||||||  |||||  ||||||||| ||| |||| || ||||||| |||||||||||||| ||||| |||| | ||  |||| |||||  |    
T  18976259 cgggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtagg 18976358  T
Q  327 taccaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaat 397  Q
    | ||| |||||||||||||| || ||| |||||| ||||  ||||| | |||||||| |||||| ||||||    
T  18976359 tcccatcatcattaattatttttatttttttcaaaattt--tgtgtttatatctctccaaatggtagaaat 18976427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Complemental strand, 39426283 - 39426212
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||| ||||||| | || |||| ||||||||| || || |||| |||||||||||||    
T  39426283 ttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaattatt 39426212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 52280041 - 52280112
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||| ||||||||  |||| |||| || |||||||||  | ||||||||||||||||||    
T  52280041 ttggagagagatagacataaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatt 52280112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 1609622 - 1609663
Alignment:
Q  356 ttcaagatttgatgtgtctttatctctctaaatggaagaaat 397  Q
    |||||||||| ||||||||||| ||||||||||| |||||||    
T  1609622 ttcaagattttatgtgtctttacctctctaaatgaaagaaat 1609663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 42720819 - 42720888
Alignment:
Q  334 atcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    ||||||| ||||| | | || |||||| | || ||||||||||||||||||||||| ||||||| |||||    
T  42720819 atcattatttattttgtattttttcaaaactttatgtgtctttatctctctaaatgaaagaaatggagaa 42720888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 24073735 - 24073534
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||||||   |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||| |||||||||||| ||     
T  24073735 gggtgaagatcctccccatttggcaaaataaatggagatttgtaagttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtc 24073636  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    || |||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||     
T  24073635 ccgccatcattaattatatatttttt-tttcaagattttatgtgccttcatctctccaaatggaagaaattgagaaacacat-aaatggagaggatcttc 24073538  T
Q  428 accc 431  Q
    ||||    
T  24073537 accc 24073534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 19901874 - 19902076
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||| ||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||| |||||||||||| ||     
T  19901874 gggtgaagatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtc 19901973  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||||||||    
T  19901974 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacacat-aaatggagaggatctt 19902071  T
Q  427 aaccc 431  Q
    |||||    
T  19902072 aaccc 19902076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 23610761 - 23610559
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||  ||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||     
T  23610761 gggtgaagatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtc 23610662  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||||||||||||| || ||||||  || ||||||||||| |||| |||||||||||| |||| |||||||| |||||||| || ||| ||||||||||||    
T  23610661 ccaccatcattaaata-tattttacttttttcaagattttatgtatctttatctctccaaattgaagaaatggagaaacatat-aaatggagaggatctt 23610564  T
Q  427 aaccc 431  Q
    |||||    
T  23610563 aaccc 23610559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 56558398 - 56558196
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |||| || ||||||||| ||     
T  56558398 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtgggtc 56558299  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||| |    
T  56558298 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatagagaaacatat-aaatggagaggatcct 56558201  T
Q  427 aaccc 431  Q
    |||||    
T  56558200 aaccc 56558196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 229 - 411
Target Start/End: Original strand, 3952126 - 3952309
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| || | |||||||||| ||||||||| ||||||||| |||| |||| |||||||||||| ||     
T  3952126 gggtgaagatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtc 3952225  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataa 411  Q
     ||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||    
T  3952226 tcaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataa 3952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 230 - 412
Target Start/End: Complemental strand, 34778539 - 34778356
Alignment:
Q  230 ggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtac 329  Q
    |||||| |||||||  |||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| |||| | || |||||||||||| || |    
T  34778539 ggtgaagatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcc 34778440  T
Q  330 caccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| | || |||||||| ||||||||||||||    
T  34778439 caccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccacattgaagaaatggagaaacacataaa 34778356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 33247085 - 33247287
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||||||| |||||| |||| |||  ||||||||| || ||    
T  33247085 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggttctaccactaaatgggt 33247184  T
Q  328 accaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
     |||||||||||||||| |||||| | |||   ||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||| ||    
T  33247185 tccaccatcattaatta-tattttatttttttcgattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatccta 33247282  T
Q  428 acccg 432  Q
    |||||    
T  33247283 acccg 33247287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 5763118 - 5763302
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||||||||||| |||||| |||  |||||||||| ||||||| ||||||||||| |||| |||| |||||||||||| ||     
T  5763118 gggtgaagatcctctcaatttggcaaaatatatggagttttacaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtc 5763217  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| |||||    
T  5763218 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatataaa 5763302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 18206996 - 18207198
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||| ||||||||||| || |||| ||||| |||| ||||||||| ||||||||| |||| |||| |||||||||||| ||     
T  18206996 gggtgaagatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtc 18207095  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||| |||||||||||| ||||||   | ||||||||||| |||||||||||||| || |||| |||||||||||||||||||| ||| |||||||||| |    
T  18207096 ccatcatcattaatta-tattttacctttttcaagattttatgtgtctttatctttccaaattgaagaaattgagaaacacat-aaatggagaggatcct 18207193  T
Q  427 aaccc 431  Q
    |||||    
T  18207194 aaccc 18207198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 5416422 - 5416607
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||| |||||||||||||| |||| |||||||||| |||||||||| |||||||| | || |||| |||||||||||| ||     
T  5416422 gggtgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacac-aaaaatagattgtgggtcctaccactaagtgggtc 5416520  T
Q  329 ccaccatcattaattattatt---ttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||||  ||   |||| ||| ||||||| |||||||||||||| || |||| |||||||| ||||||||||||||    
T  5416521 ccaccatcattaattatattttacttttttttaaagattttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaa 5416607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 412
Target Start/End: Original strand, 47922034 - 47922215
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| ||||| ||||||||||||||||||||||  |||| |||||    ||||||| ||||||||||||| | || |||| |||||||||||| ||    
T  47922034 cgggtgaatatcctttttatttggcaaaataaatggaattttgcaagtt----aaagataaacacaaaaaatagatagtgggtcttaccactaagtgggt 47922129  T
Q  328 accaccatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
     ||||||||||||| |||  ||| ||| |||||| |||| | |||||||||||||||||||| |||||||| ||||||||||||||    
T  47922130 tccaccatcattaaatatattttatttttttcaatattttacgtgtctttatctctctaaattgaagaaatggagaaacacataaa 47922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 226 - 412
Target Start/End: Complemental strand, 39862639 - 39862452
Alignment:
Q  226 ctcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtga 325  Q
    |||||||||| |||||||  |||||  ||||||||| ||  |||| ||||| |||| ||||||||||||||||||| ||||  ||| || |||||| |||    
T  39862639 ctcgggtgaagatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagatggtgtgtcctatcactaaatga 39862540  T
Q  326 gtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    || |||||||||||||||| ||||||  || ||| ||||||| ||||||||||||||||| |||| ||||||| |||||||||||||||    
T  39862539 gttccaccatcattaatta-tattttactttttttaagattttatgtgtctttatctctccaaattgaagaaaatgagaaacacataaa 39862452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 229 - 428
Target Start/End: Original strand, 38079676 - 38079875
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||  |||||||||||||| ||||  |||| |||| |||||||||||| |||||| |||| |||| ||| ||||||||  |     
T  38079676 gggtgaagatcctctccatttaacaaaataaatggagttttgctagtttgagagagatagacacaagaaatagatggtgggtcctactactaagtggatt 38079775  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| ||| |||| ||||||| ||| ||| ||||||||||||    
T  38079776 ccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatggagaaacgcat-aaatggagaggatctt 38079873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 412
Target Start/End: Original strand, 33262507 - 33262692
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| ||||||| ||||||||||||||||| | | |||| ||||| |||| ||||||||||||||||||| |||| | || ||||||||| |  ||    
T  33262507 cgggtgaagatcctctctatttggcaaaataaattgtgttttgcaagttagagagagatagacacaaaaaatagatggtggatcctaccactaaataggt 33262606  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
     |||||||||||||||| ||||||  || ||| || |||| ||||||||||||||||| |||| |||||||| || ||| |||||||    
T  33262607 cccaccatcattaatta-tattttactttttttaaaattttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaa 33262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 30568003 - 30567868
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattat 345  Q
    |||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||| |||| |||| |||||||||||| || ||| ||||||||||||     
T  30568003 atttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggttccatcatcattaatta- 30567905  T
Q  346 tatttt--ttctttcaagatttgatgtgtctttatct 380  Q
    ||||||  || |||||| |||| ||||||||||||||    
T  30567904 tattttacttttttcaaaattttatgtgtctttatct 30567868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 431
Target Start/End: Complemental strand, 12153274 - 12153088
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||| ||| |||| ||||                    
T  12153274 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaattagatggtgggtc---------------- 12153191  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
     ||||||||||||||||| |||||  || ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||||||||     
T  12153190 -ccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcc 12153094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 308 - 412
Target Start/End: Original strand, 12241443 - 12241548
Alignment:
Q  308 ggtcataccactaagtgagtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaac 405  Q
    |||| |||||||||||| || ||||||||||||||||| |||||  || ||||||||||| ||||||||||||||||| |||| |||||||| |||||||    
T  12241443 ggtcctaccactaagtgggtcccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaac 12241541  T
Q  406 acataaa 412  Q
    |||||||    
T  12241542 acataaa 12241548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 345
Target Start/End: Original strand, 12312430 - 12312548
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagac-acaaaaaatagttggtaggtcataccactaagtgag 326  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||| | ||||||||| |||| | || |||||||||||| |    
T  12312430 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacaaaaaaaaatagatggtggatcctaccactaagtggg 12312529  T
Q  327 taccaccatcattaattat 345  Q
    | ||| |||||||||||||    
T  12312530 tcccatcatcattaattat 12312548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 56269078 - 56269199
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||| |||||||||||| || |||||||||||||||||| ||||| ||       ||| ||||||||    
T  56269078 ttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatt-tttttact-------ttttatgtgtct 56269169  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||| |||| ||||||    
T  56269170 ttatctctctaaatggaacaaatggagaaa 56269199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 33524381 - 33524313
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaa 297  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  33524381 gggtgaagatcctctccatttggcaaaataaatggagatttggaagttggagagagatagatacaaaaa 33524313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 12312586 - 12312643
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||| |||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  12312586 tttcaaaattttatgtgtctttatctctctaaattgaagaaatggagaaacacataaa 12312643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 52018775 - 52018700
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
    ||||||||||| |||||| |||||||||| |||| |||||||| ||||||||||| ||| |||||||||| ||||||    
T  52018775 tttcaagattttatgtgtttttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcctaaccc 52018700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 52018882 - 52018811
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaata 300  Q
    ||||||| |||||||  |||| ||||||||||||||| |||| |||||||||| ||||||| ||||||||||    
T  52018882 gggtgaagatcctctccatttagcaaaataaatggagttttgcaagttggagagagatagatacaaaaaata 52018811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 56453822 - 56453893
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||||||||||| |||| |||| || || |||||| || ||||||||||| ||||||    
T  56453822 ttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatt 56453893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 17080726 - 17080780
Alignment:
Q  358 caagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||| || |||||||||||||| |||| |||||||| ||||||||||||||    
T  17080726 caagattttatctgtctttatctctccaaattgaagaaatggagaaacacataaa 17080780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 5524520 - 5524407
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||| ||||||||  |||| |||| || || |||||| || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  5524520 ttggagagagatagacataaaaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 5524430  T
Q  375 ttatctctctaaatggaagaaat 397  Q
    |||||||||||||||||| ||||    
T  5524429 ttatctctctaaatggaacaaat 5524407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 404
Target Start/End: Original strand, 37002261 - 37002373
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctct 382  Q
    ||||||||||||||||||  |||| | || ||  |||||||| || ||||||||||||||||||  |||| ||||       | ||||||||||||||||    
T  37002261 agatagacacaaaaaataagtggtggatcctattactaagtgggtcccaccatcattaattatt--ttttacttt-------ttatgtgtctttatctct 37002351  T
Q  383 ctaaatggaagaaattgagaaa 404  Q
    |||||||||| |||| ||||||    
T  37002352 ctaaatggaacaaatggagaaa 37002373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 388
Target Start/End: Complemental strand, 1871387 - 1871237
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatc 336  Q
    |||||||  ||||| |||||||||||||| | || || ||||||| ||||||||| |||| |||| | || | || ||| |||||||| || ||| ||||    
T  1871387 atcctctcaatttgacaaaataaatggag-tatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcccatcatc 1871289  T
Q  337 attaattattattttttctttcaagatttgatgtgtctttatctctctaaat 388  Q
    |||||||||| | | || ||||||  ||   |||||||||||||||| ||||    
T  1871288 attaattattttatattttttcaaatttctttgtgtctttatctctccaaat 1871237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 31862260 - 31862351
Alignment:
Q  313 taccactaagtgagtaccaccatcattaattattattttttctttc-aagatttgatgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    |||||||||||| || |||||||||||||||||| |||  | |||| || ||||  ||||||| |||||||| |||||| |||||| |||||    
T  31862260 taccactaagtgggtcccaccatcattaattattttttactttttctaaaattttgtgtgtctatatctctccaaatggtagaaatagagaa 31862351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 36688190 - 36688261
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||||||||||  || |  ||| || ||||||||| || ||||||||||||||||||    
T  36688190 ttggagagagatagacacaaaaaataagtgttgagtcctatcactaagtgggtcccaccatcattaattatt 36688261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 47922346 - 47922440
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||||| ||| |||| || ||||||| | |||||||||||| ||||| |||| |||| |||||||||||| || ||| ||||  ||||||||    
T  47922346 aaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcccatcatctataattatt 47922440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 25442271 - 25442331
Alignment:
Q  368 tgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||||||||||| ||||||||||||| |||||   ||| ||| |||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccat-aaatggagaggatcttaac 25442331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 227 - 432
Target Start/End: Complemental strand, 13238802 - 13238597
Alignment:
Q  227 tcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgag 326  Q
    |||| |||| |||||||  ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| |||| |||||| ||||| |    
T  13238802 tcggatgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtggg 13238703  T
Q  327 taccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
    | ||||||||||||||||| | || ||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||| ||| ||| |||||||||||    
T  13238702 tcccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaattgaagaaattgagaaacgcat-aaatggagaggatct 13238604  T
Q  426 taacccg 432  Q
    | |||||    
T  13238603 tcacccg 13238597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 228 - 431
Target Start/End: Complemental strand, 28565012 - 28564808
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||| |||| |||| |||||||||||| ||    
T  28565012 cgggtgaagatcctctccatttggcaaaataaatggagttttttaagttgtagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 28564913  T
Q  328 accaccatcattaattattattt--tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
     |||||||||||||||||  |||  ||| ||  ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||||    
T  28564912 cccaccatcattaattatattttacttttttaaaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatct 28564814  T
Q  426 taaccc 431  Q
    | ||||    
T  28564813 tcaccc 28564808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 228 - 431
Target Start/End: Complemental strand, 35316945 - 35316742
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    |||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| | || |||||||||||| ||    
T  35316945 cgggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 35316846  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
     |||||||||||||||| ||||||  || ||||||||||| || |||||||||||||| |||| |||||||| ||||||||| | ||| ||||||||||     
T  35316845 cccaccatcattaatta-tattttacttttttcaagattttatatgtctttatctctccaaattgaagaaatggagaaacacgt-aaatggagaggatcc 35316748  T
Q  426 taaccc 431  Q
    ||||||    
T  35316747 taaccc 35316742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 229 - 397
Target Start/End: Original strand, 23259443 - 23259612
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||| | |||| |||||||||| ||||||||||||||||||| |||| |||| ||| ||||||||  |     
T  23259443 gggtgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaaaatagctggtgggtcctactactaagtggatc 23259542  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaat 397  Q
    |||||||||||||||| ||||||  || ||| ||||||| || |||||||||| ||| |||| ||||||||    
T  23259543 ccaccatcattaatta-tattttactttttttaagattttatatgtctttatccctcaaaattgaagaaat 23259612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 2063464 - 2063359
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttgg-taggtcataccactaagtgagtaccaccat 335  Q
    |||||||| ||||| |||||||||| ||| |||| || ||||||| ||||||||||||||||||| ||| | |||| |||||| ||||| || |||||||    
T  2063464 atcctcttcatttgacaaaataaatagag-tttgcaatttggagagagatagacacaaaaaatagatggtttggtcctaccaccaagtgggttccaccat 2063366  T
Q  336 cattaat 342  Q
    |||||||    
T  2063365 cattaat 2063359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 8988928 - 8988809
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  || |||||| || ||||||||| || |||||||||||||||||| ||| |          ||| ||||||||    
T  8988928 ttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcccaccatcattaattattttttat----------ttttatgtgtct 8988839  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||| |||| ||||||    
T  8988838 ttatctctctaaatggaacaaatggagaaa 8988809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 21454476 - 21454567
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||||||||| ||||||| || |||| ||||||||||||||| ||| | || |||||||||| |||||| || ||||||||||||||||||    
T  21454476 aaaataaatggag-tttgtaatttagagagagatagacacaaaaa-tagattgtgggtcataccattaagtgggttccaccatcattaattatt 21454567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 375066 - 374946
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||| ||  |||||||| || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  375066 ttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 374976  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||| |||| ||||||    
T  374975 ttatctctctaaatggaacaaatggagaaa 374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 41983423 - 41983497
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
    ||||||||||| ||||||||||||||||| ||||  ||||||| ||||||||||| ||| |||||||||||||||||    
T  41983423 tttcaagattt-atgtgtctttatctctccaaattaaagaaatggagaaacacat-aaatggagaggatcttaaccc 41983497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 45625034 - 45625106
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaata 300  Q
    |||||||| |||||||  |||||||||||||||||||| |||  |||||||||| |||||||||||| |||||    
T  45625034 cgggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaagaaata 45625106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 409
Target Start/End: Original strand, 45625118 - 45625199
Alignment:
Q  329 ccaccatcattaattattattttttcttt--caagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacat 409  Q
    ||||||||||||||| ||||||| | |||  |||||||| | |||||||||||||||||||| |||||||| |||||||||||    
T  45625118 ccaccatcattaatt-ttattttatatttttcaagattttacgtgtctttatctctctaaattgaagaaatggagaaacacat 45625199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 429
Target Start/End: Complemental strand, 2061369 - 2061296
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    ||||||||||| ||| ||||||||||||| |||||||||||||||||| ||  || ||| |||||||||||||||    
T  2061369 tttcaagattttatgcgtctttatctctccaaatggaagaaattgagatactaat-aaatggagaggatcttaac 2061296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 39465794 - 39465710
Alignment:
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| |||||  || ||||||||||| |||||| |||||||||| |||| ||| |||| ||||||||||||||    
T  39465794 ccaccatcattaattat-attttacttttttcaagattttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaa 39465710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 374521 - 374578
Alignment:
Q  355 tttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||| |||||| |||||||||||||||| ||||||  ||||||||||||||    
T  374521 tttcaagattttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaa 374578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 11864989 - 11864916
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatag 301  Q
    |||||||| |||||||  ||||  |||||||||||||| |||  |||||||||| |||||||||||||||||||    
T  11864989 cgggtgaagatcctctccatttatcaaaataaatggagttttacaagttggagagagatagacacaaaaaatag 11864916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 23459848 - 23459968
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||  |||| || |||||| || || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  23459848 ttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 23459938  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||| ||||||| |||| ||||||    
T  23459939 ttatctctctgaatggaacaaatggagaaa 23459968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 403
Target Start/End: Original strand, 373172 - 373285
Alignment:
Q  281 aaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatct 380  Q
    ||||||||||||||||||||| |||| |||||||  | ||| ||| | ||||||| |||||||||         ||| |||||||  ||| |||||||||    
T  373172 aaagatagacacaaaaaataggtggtgggtcatattattaaatgaatcccaccattattaattat---------ttttaagattttttgtatctttatct 373262  T
Q  381 ctctaaatggaagaaattgagaa 403  Q
     |||||||||||||||| |||||    
T  373263 ttctaaatggaagaaatggagaa 373285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 29188643 - 29188606
Alignment:
Q  367 atgtgtctttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  29188643 atgtgtctttatctctctaaatggaacaaatggagaaa 29188606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 38824147 - 38824078
Alignment:
Q  227 tcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaa 296  Q
    |||||| || ||| ||| ||||||  ||||||||||||| ||||||| ||||||| ||||||||| ||||    
T  38824147 tcgggttaagatcatctctatttgctaaaataaatggagttttgtaatttggagagagatagacaaaaaa 38824078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 30709183 - 30709115
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaatt 343  Q
    ||||||| ||||||||||| ||||||| |  | |||| ||||||||||||  | |||||||||||||||    
T  30709183 ttggagagagatagacacataaaatagatattgggtcctaccactaagtggatcccaccatcattaatt 30709115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 30824166 - 30824122
Alignment:
Q  359 aagatttgatgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    |||||||  ||||||| |||||||||||||||||||||| |||||    
T  30824166 aagattttttgtgtctatatctctctaaatggaagaaatggagaa 30824122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 41073026 - 41073070
Alignment:
Q  359 aagatttgatgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    |||||||  |||||||||||||||||||||| ||||||| |||||    
T  41073026 aagattttttgtgtctttatctctctaaatgaaagaaatggagaa 41073070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 9559010 - 9559194
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||| |||| |||||||||||| ||     
T  9559010 gggtgaagatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtc 9559109  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| | || ||| ||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||    
T  9559110 ccaccatcattaattatattttatttttttcaagattttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaa 9559194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 229 - 412
Target Start/End: Complemental strand, 4888586 - 4888402
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | || |||| |||||||||||  ||     
T  4888586 gggtgaagatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtc 4888487  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| | || | | ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  4888486 ccaccatcattaattatattttatgttttttaagattttatgtgtctttatctctccaaatggaagaaattgagaaacacataaa 4888402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 229 - 412
Target Start/End: Complemental strand, 21151271 - 21151087
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| |||||||||||| |||||| |||  | || |||||||||||| ||     
T  21151271 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtc 21151172  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||    
T  21151171 ccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaa 21151087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 246 - 412
Target Start/End: Complemental strand, 7362670 - 7362503
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattat 345  Q
    ||||| |||||||||||||| |||| || ||||||| ||||||||||||||||||| |||| |||| ||||||||| || || ||||||||||||||||     
T  7362670 atttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggttccaccatcattaatta- 7362572  T
Q  346 tatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||    
T  7362571 tattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaa 7362503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 229 - 412
Target Start/End: Complemental strand, 18198375 - 18198191
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| || ||||||| | ||||||||||||||||| |||| |||  | |||||||||||||     
T  18198375 gggtgaagatcctctccatttggcaaaataaatggagttttgcaaattggagataaatagacacaaaaaatagatggtgggttctgccactaagtgagtc 18198276  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||||||| | || ||| ||||||||||| |||||  |||||||||  |||| |||||||| ||||||||||||||    
T  18198275 ccaccatcattaattatattttatttttttcaagattttatgtgattttatctctacaaattgaagaaatggagaaacacataaa 18198191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 229 - 412
Target Start/End: Complemental strand, 16366637 - 16366453
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||| |||||||||||||| |||| |||||||||| ||||||||| || |||||| |||| | || |||||||||||| ||     
T  16366637 gggtgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtc 16366538  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||| ||||||  || ||||||||||| | |||| |||||||||| |||| |||||||| ||||||||||||||    
T  16366537 ccaccatcattaatta-tattttacttttttcaagattttacgtgtttttatctctccaaattgaagaaatggagaaacacataaa 16366453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 230 - 412
Target Start/End: Original strand, 45260384 - 45260567
Alignment:
Q  230 ggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtac 329  Q
    |||||| |||||||  |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||| | || | || ||||||||||||  | |    
T  45260384 ggtgaagatcctctccatttggcaaaataaattgagttttgcaagttggagagagatagacacaaaaaatagattgtggatcctaccactaagtggatcc 45260483  T
Q  330 caccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    || |||||||||||| ||||||  || ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||    
T  45260484 catcatcattaatta-tattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacataaa 45260567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 12139446 - 12139245
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagt-gagt 327  Q
    ||||||| || ||||| ||||||||||||||||| || |||| |||||||||| ||||||||||||||||||| |||| |||| ||||| ||||| | ||    
T  12139446 gggtgaagattctcttcatttggcaaaataaatgaagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggggt 12139347  T
Q  328 accaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
     |||||||||||||||| ||||||  || ||| ||||||| |||||  |||||||||| |||| |||||||| ||||||||||| ||| ||||||||||     
T  12139346 cccaccatcattaatta-tattttactttttttaagattttatgtg--tttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcc 12139251  T
Q  426 taaccc 431  Q
    ||||||    
T  12139250 taaccc 12139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 267 - 431
Target Start/End: Original strand, 25084722 - 25084886
Alignment:
Q  267 tttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattat-tattttttctttcaagattt 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||| || ||||||||||||||||| | || ||| |||||| ||||    
T  25084722 tttgtaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaattatattttatttttttcaaaattt 25084821  T
Q  366 gatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
     ||||||||||||||||  ||||  || |||| ||||||||||| ||| |||||||||| ||||||    
T  25084822 tatgtgtctttatctcttcaaattaaaaaaatggagaaacacat-aaatggagaggatcataaccc 25084886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 429
Target Start/End: Original strand, 47226035 - 47226229
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacca 331  Q
    |||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||  |||| ||||  |||||||| || || |||    
T  47226035 tgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaata--tggtgggtcccaccactaaatgggtccca 47226132  T
Q  332 ccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    ||||||||||||| ||||||  || || |||||||| |||||| |||||||||| |||| |||||||| ||||||||||| ||| |||||||||| ||||    
T  47226133 ccatcattaatta-tattttactttttccaagattttatgtgt-tttatctctccaaattgaagaaatagagaaacacat-aaatggagaggatcctaac 47226229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 44648083 - 44647882
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgag-- 326  Q
    ||||||| |||||||  ||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||| |||| | ||  ||||||||||| |      
T  44648083 gggtgaagatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtc 44647984  T
Q  327 taccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatc 424  Q
    | || ||||||||||||| ||||||   | ||||||||||| |||||||||||||||   |||| |||||||| ||||||||||| ||| ||||||||||    
T  44647983 tccctccatcattaatta-tattttacatttttcaagattttatgtgtctttatctc---aaattgaagaaatggagaaacacat-aaatggagaggatc 44647889  T
Q  425 ttaaccc 431  Q
     ||||||    
T  44647888 ataaccc 44647882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 253 - 412
Target Start/End: Original strand, 47500262 - 47500423
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt- 350  Q
    ||||||||| ||| ||||||| ||||||| |||||||||||||| ||||| |||| ||||  ||||||||||| || ||| |||||||||||||| |||     
T  47500262 aaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 47500361  T
Q  351 tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||| |||||| ||||  ||||||| ||||||||||||||| |||||| |||||  |||||||    
T  47500362 tttttttcaaaattttgtgtgtctatatctctctaaatggtagaaatggagaaggacataaa 47500423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 412
Target Start/End: Original strand, 34985899 - 34986085
Alignment:
Q  227 tcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtga 325  Q
    |||||| ||||||||||  |||||  ||||||||| ||| |||| || ||||||| |||||||||||||| ||||| |||| ||||| |||||||| |||    
T  34985899 tcgggttaaaatcctctcaatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtcaaaccactaaatga 34985998  T
Q  326 gtaccaccatcattaattattatt--ttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    || ||| |||||||||||||| ||  |||| |||||| ||||  | ||||| |||||||| |||||| |||||| |||||| |||||||    
T  34985999 gtcccatcatcattaattattttttattttttttcaaaattt--tatgtctatatctctccaaatggtagaaatggagaaagacataaa 34986085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 412
Target Start/End: Complemental strand, 33450602 - 33450441
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt- 350  Q
    ||||||||| ||| |||| || ||||||| |||||||||||||| ||||| |||| ||||  ||||||||||| || ||| |||||||||||||| |||     
T  33450602 aaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgggtcccatcatcattaattatttttta 33450503  T
Q  351 tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||| |||||| ||||  ||||| | |||||||| |||||| |||||| |||||  |||||||    
T  33450502 tttttttcaaaattttgtgtgtttatatctctccaaatggtagaaatggagaaggacataaa 33450441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 283 - 412
Target Start/End: Complemental strand, 32916021 - 32915894
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctct 382  Q
    ||||||||||||||||||  | || |||| ||||| ||||||||| |||||||||| ||||| |||||||| ||| ||  |||  |||||||||||||||    
T  32916021 agatagacacaaaaaataaatagtgggtcctaccattaagtgagtcccaccatcatgaatta-tatttttt-tttaaaacttttttgtgtctttatctct 32915924  T
Q  383 ctaaatggaagaaattgagaaacacataaa 412  Q
    | ||||||||||||| |||||  |||||||    
T  32915923 ccaaatggaagaaatggagaagaacataaa 32915894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 39855781 - 39855884
Alignment:
Q  240 ctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcatt 339  Q
    ||||| ||||| |||| ||||||||| ||||||| ||||||| ||||||||||| |||| || |||| |||| |||||||||||| || ||| |||||||    
T  39855781 ctcttcatttgacaaattaaatggag-tttgtaatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtcccatcatcatt 39855879  T
Q  340 aatta 344  Q
    |||||    
T  39855880 aatta 39855884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 429
Target Start/End: Complemental strand, 29631156 - 29630967
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatc 336  Q
    |||||||  |||||| ||||||||||||| |||| || ||| |||  ||||||||||||| |||| | || ||||  ||||||| ||  || |||| |||    
T  29631156 atcctctccatttggtaaaataaatggag-tttgcaatttgaaga--gatagacacaaaacatagatagtgggtccaaccactatgtaggtcccactatc 29631060  T
Q  337 attaattattatttt-ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||||| |||  || |||||| |||| |||||||||||| |||| ||||| ||||||| |||||| ||||  || |||||||||||||||    
T  29631059 attaattattctttacttttttcaaaattttatgtgtctttatatctccaaatgaaagaaatggagaaagacat-gaatggagaggatcttaac 29630967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 47799902 - 47799973
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||||||||||  || | |||| || ||||||||| || ||||||||||||||||||    
T  47799902 ttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatt 47799973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 989240 - 989131
Alignment:
Q  236 aatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccat 335  Q
    ||||||||  ||||| |||| ||||||||| |||| || ||||||| ||||||||||||||||||  | || |||| |||||||||||  || | |||||    
T  989240 aatcctctccatttgacaaattaaatggag-tttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtccaaccat 989142  T
Q  336 cattaattatt 346  Q
     ||||||||||    
T  989141 aattaattatt 989131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 397
Target Start/End: Original strand, 40023258 - 40023380
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||||||||||||| | |||||||||  | | || ||||| |||||| || |||||| ||||||||||| ||| || |||||   |||  || || |    
T  40023258 ttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggtcccaccaccattaattattttttcttttttcatttttttttgagttt 40023357  T
Q  375 ttatctctctaaatggaagaaat 397  Q
     ||||||||||||||||||||||    
T  40023358 atatctctctaaatggaagaaat 40023380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 404
Target Start/End: Original strand, 19889044 - 19889156
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctct 382  Q
    ||||||| ||||||||||  | || |||| || ||||||||| || ||||||||||||||||||  |||| ||||       | ||||||||||||||||    
T  19889044 agatagatacaaaaaataagttgtgggtcctatcactaagtgggttccaccatcattaattatt--ttttacttt-------ttatgtgtctttatctct 19889134  T
Q  383 ctaaatggaagaaattgagaaa 404  Q
    |||||||||| |||| ||||||    
T  19889135 ctaaatggaataaatggagaaa 19889156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 40019712 - 40019626
Alignment:
Q  317 actaagtgagtaccaccatcattaatta--ttattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgaga 402  Q
    ||||| ||||| ||||||||||||||||  ||||  ||| |||||||||||  ||||| |||||||||| ||||||| ||||||||||    
T  40019712 actaaatgagtcccaccatcattaattactttatacttt-tttcaagattttttgtgtttttatctctccaaatggaggaaattgaga 40019626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 403
Target Start/End: Complemental strand, 30588600 - 30588489
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctct 382  Q
    ||||||||||||||||||  ||   |||| || ||||||||| || ||||||||||||||||||  |||| ||||       | ||||||||||||||||    
T  30588600 agatagacacaaaaaataagtgacgggtcctatcactaagtgggtcccaccatcattaattatt--ttttacttt-------ttatgtgtctttatctct 30588510  T
Q  383 ctaaatggaagaaattgagaa 403  Q
    |||||||||| |||| |||||    
T  30588509 ctaaatggaacaaatggagaa 30588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 32916234 - 32916171
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||| |||| |||||||| | || |||||||||||||||||  | ||||||||||||||||||    
T  32916234 agatacacacgaaaaataggttgtgggtcataccactaagtggattccaccatcattaattatt 32916171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 429
Target Start/End: Complemental strand, 41271849 - 41271791
Alignment:
Q  370 tgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||||||||||||||||||||||| ||| || | | |||| |||||||||||||||    
T  41271849 tgtctttatctctctaaatggaagaaatggag-aagataaaaaatggagaggatcttaac 41271791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 299
Target Start/End: Original strand, 47271107 - 47271173
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaat 299  Q
    |||| |||||||  |||| ||||||||||||||| |||| || ||||||| |||||||||||||||||    
T  47271107 tgaagatcctctccatttagcaaaataaatggag-tttgcaatttggagagagatagacacaaaaaat 47271173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Original strand, 33608850 - 33608950
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaa-tagttggtaggtcataccactaagtgagtaccaccatcattaatta 344  Q
    |||||| ||||||||||||| |||| || ||||||| ||||| |||||||||| ||| ||| || |  ||| || | |||||| ||||||||||||||||    
T  33608850 atttggtaaaataaatggag-tttgcaatttggagagagataaacacaaaaaaatagatggaagatactactaccaggtgagttccaccatcattaatta 33608948  T
Q  345 tt 346  Q
    ||    
T  33608949 tt 33608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 33683238 - 33683303
Alignment:
Q  348 ttttttctttcaagatttgatgtgtcttt-atctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||||||| | || |||||||||| |||| | ||||| ||||||||||| |||||||||||    
T  33683238 ttttttctttcaaaactttatgtgtcttttatctttttaaatagaagaaattgaaaaacacataaa 33683303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 46802336 - 46802404
Alignment:
Q  278 gagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    |||| ||||||||| |||||||||  ||| |||| |||||||||||| || |||||| | |||||||||    
T  46802336 gagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcccaccaccgttaattatt 46802404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 229 - 407
Target Start/End: Complemental strand, 17944281 - 17944102
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| || ||     
T  17944281 gggtgaagatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtc 17944182  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacac 407  Q
    |||||||||||||||| ||||||  || || |||||||| |||||| |||||||||| |||| |||||||| |||||||||    
T  17944181 ccaccatcattaatta-tattttactttttccaagattttatgtgtttttatctctccaaattgaagaaatggagaaacac 17944102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 230 - 431
Target Start/End: Original strand, 1249105 - 1249304
Alignment:
Q  230 ggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtac 329  Q
    |||||| |||||||  |||||||||||||||||||| ||||||||||||||| ||| ||  ||||||||||| |||| |||| |||||||||||| || |    
T  1249105 ggtgaagatcctctccatttggcaaaataaatggagttttgtaagttggagagagacag--acaaaaaatagatggtgggtcctaccactaagtgggtcc 1249202  T
Q  330 caccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    ||||||||||||||| ||||||  || ||||||||||| |||||||||||||| || |||| |||||||| ||||||||||| ||| |||||||||||||    
T  1249203 caccatcattaatta-tattttacttttttcaagattttatgtgtctttatctttccaaattgaagaaatggagaaacacat-aaatggagaggatctta 1249300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 4804567 - 4804365
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||  |||||||||| ||||||||||||||||||| |||| |||| |||||||||||| ||     
T  4804567 gggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtc 4804468  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||| |    
T  4804467 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatat-aaatggagaggatcct 4804370  T
Q  427 aaccc 431  Q
    |||||    
T  4804369 aaccc 4804365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 232 - 431
Target Start/End: Complemental strand, 27826654 - 27826455
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacca 331  Q
    |||| |||||||  |||||| ||||||| || ||||||| ||| | |||| ||||||||||||||||||| |||| |||| |||||||||||| || |||    
T  27826654 tgaagatcctctccatttggtaaaataactgaagatttgcaaggttgagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtccca 27826555  T
Q  332 ccatcattaattattattttttctttcaagatttg--atgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    |||||||||||||| ||||| | ||| || ||||   ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| ||    
T  27826554 ccatcattaattat-attttattttttaaaattttttatgtgtctttatctctcaaaatggaagaaattgagaaacacat-aaatggagaggatcttcac 27826457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 253 - 431
Target Start/End: Complemental strand, 7162179 - 7162001
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt- 351  Q
    ||||||||||||| |||| |||||||||| |||||||||||| |||||| |||| |||| ||| |||||||| || |||||||||||||||| ||||||     
T  7162179 aaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcccaccatcattaatta-tatttta 7162081  T
Q  352 -ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
     || ||||||||||| ||||||||||||||||| |||| |||||||| ||||||||| |||| | ||||||||| ||||||    
T  7162080 cttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacgtaaata-gagaggatcctaaccc 7162001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 402
Target Start/End: Complemental strand, 12412739 - 12412582
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattat 345  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||| |||||| |||| |||| |||||||||||| || ||||||||||||||||     
T  12412739 atttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggttccaccatcattaatta- 12412641  T
Q  346 tatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgaga 402  Q
    ||||||  || |||||| |||| |||| | |||||||||| |||| |||||||| ||||    
T  12412640 tattttacttttttcaaaattttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 397
Target Start/End: Original strand, 21159325 - 21159494
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||  |||||||||| || |||| |||||||||| | ||||||||||||||||| |||| |||| |||||||||||| ||     
T  21159325 gggtgaagatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtc 21159424  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaat 397  Q
    |||||||||||||||| ||||||  || ||||||||||| |||||||||||| |||| |||| ||||||||    
T  21159425 ccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatatctccaaattgaagaaat 21159494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 13089703 - 13089821
Alignment:
Q  227 tcgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgag 326  Q
    ||||||||| |||||||  |||||||||||||||||| | |||| |||||||||| |||||||||||||| |||| |||| |||| |||||||||||| |    
T  13089703 tcgggtgaagatcctctccatttggcaaaataaatggtgttttgcaagttggagagagatagacacaaaatatagatggtgggtcctaccactaagtggg 13089802  T
Q  327 taccaccatcattaattat 345  Q
      |||||||||||||||||    
T  13089803 ccccaccatcattaattat 13089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 29698220 - 29698080
Alignment:
Q  291 acaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaat 388  Q
    ||||||||||| |||| | || ||||| |||||| || ||||||||||||||||| |||||  || ||||||||||| |||||||||||| |||| ||||    
T  29698220 acaaaaaatagatggtggatcctaccattaagtgggtcccaccatcattaattat-attttacttttttcaagattttatgtgtctttatttctccaaat 29698122  T
Q  389 ggaagaaattgagaaacacataaaaaggagaggatcttaaccc 431  Q
     |||||||| ||||||||||| ||| |||||||||| ||||||    
T  29698121 tgaagaaatggagaaacacat-aaatggagaggatcctaaccc 29698080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 397
Target Start/End: Complemental strand, 24484952 - 24484839
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||| || ||||||||| || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  24484952 ttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 24484862  T
Q  375 ttatctctctaaatggaagaaat 397  Q
    |||||||||||||||||| ||||    
T  24484861 ttatctctctaaatggaacaaat 24484839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 30460925 - 30460770
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtag----gtcataccactaagtgagtaccaccatcattaa 341  Q
    ||||| |||||||||||||| |||| || ||||||||||||||||||||||| |||||| | |     || ||||| ||| ||||| || || | |||||    
T  30460925 atttgacaaaataaatggag-tttgcaatttggagaaagatagacacaaaaagtagttgatggatccatcctaccattaaatgagtcccgccgttattaa 30460827  T
Q  342 ttattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaat 397  Q
    ||| ||||||  || ||||||||||| ||||||||||||||||| |||| ||||||||    
T  30460826 tta-tattttacttttttcaagattttatgtgtctttatctctccaaatagaagaaat 30460770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 431
Target Start/End: Complemental strand, 32737893 - 32737791
Alignment:
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||||||||||||||||| |||||  || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||| || ||| |||||||||| |    
T  32737893 ccaccatcattaattat-attttacttttttcaaaattttatgtgtctttatctctccaaattgaagaaatggagaaacatat-aaatggagaggatcct 32737796  T
Q  427 aaccc 431  Q
    |||||    
T  32737795 aaccc 32737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 32737976 - 32737899
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggt 306  Q
    ||||||| |||||||  |||||||||||||||| ||| |||| | |||||||| ||||||||||||||||||| ||||    
T  32737976 gggtgaagatcctctccatttggcaaaataaatagagttttgcaggttggagagagatagacacaaaaaatagatggt 32737899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 232 - 412
Target Start/End: Original strand, 227522 - 227704
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgagtacc 330  Q
    |||| |||||||  |||||  ||||||||||||| |||| |  ||||||| |||||||||||||| ||||| |||| |||| ||||||||||||  | ||    
T  227522 tgaagatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtggatccc 227621  T
Q  331 accatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    | ||||||| |||||| |||   | |||||| | ||  ||||||| |||||||| |||| | |||||| ||||| ||||||||    
T  227622 atcatcattgattattttttacctttttcaaaactttgtgtgtctatatctctccaaattgtagaaatggagaagcacataaa 227704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 2800613 - 2800684
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||| ||||||||||| ||||||| | || | |||||||| |||||| || ||||||||||| ||||||    
T  2800613 ttggagagagatagacacataaaatagatagtggatcataccattaagtgggtcccaccatcattgattatt 2800684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 17398772 - 17398818
Alignment:
Q  350 ttttctttcaagatttgatgtgtctttatctctctaaatggaagaaa 396  Q
    |||| ||||||||||| ||||||||||||||||| ||||||| ||||    
T  17398772 ttttttttcaagattttatgtgtctttatctctccaaatggaggaaa 17398818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 7215854 - 7215923
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaatta 344  Q
    ||||||| ||||||||||| ||||||| | || |||| ||||||||| || || |||| |||||||||||    
T  7215854 ttggagagagatagacacataaaatagatagtgggtcctaccactaattgggtcccactatcattaatta 7215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 1516180 - 1516239
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggt 306  Q
    |||||||||||||||||||| |||| || ||||||| |||| || ||||||||||| ||||    
T  1516180 atttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggt 1516239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 1518269 - 1518328
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggt 306  Q
    |||||||||||||||||||| |||| || ||||||| |||| || ||||||||||| ||||    
T  1518269 atttggcaaaataaatggag-tttgcaatttggagagagatggatacaaaaaatagatggt 1518328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 10203537 - 10203592
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacaca 293  Q
    |||| ||||||||| |||||||||||||| | ||||| ||||||| |||||||||||    
T  10203537 atcccctttatttgtcaaaataaatggag-tatgtaatttggagatagatagacaca 10203592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 229 - 431
Target Start/End: Original strand, 19830387 - 19830591
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| ||||||| || | ||||||||||||||||| |||| |||| ||||| |||||| ||     
T  19830387 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtc 19830486  T
Q  329 ccaccatcattaattattatttt---ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatct 425  Q
    |||||||||||||||| ||||||   || ||| ||||||| ||||||||||||||||| |||| |||||||| || |||||||||||| |||||||||||    
T  19830487 ccaccatcattaatta-tattttaccttttttaaagattttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggatct 19830585  T
Q  426 taaccc 431  Q
    ||||||    
T  19830586 taaccc 19830591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 229 - 433
Target Start/End: Original strand, 43719903 - 43720107
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  ||||  |||||||||||||| |||| |||||||||| ||||||||||||||||||  | || |||| |||||||||||| ||     
T  43719903 gggtgaagatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtc 43720002  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctta 427  Q
    ||||||||||||||||| | || ||| ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| ||||| |||| ||    
T  43720003 ccaccatcattaattatattttattttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaagatccta 43720101  T
Q  428 acccgg 433  Q
    ||||||    
T  43720102 acccgg 43720107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 231 - 431
Target Start/End: Complemental strand, 40851891 - 40851690
Alignment:
Q  231 gtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacc 330  Q
    ||||| |||||||  ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |||   ||||||||||| || |     
T  40851891 gtgaagatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcct 40851792  T
Q  331 accatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaa 428  Q
    ||||||||||| |  ||||||  || ||||||||||| ||||||||||||||||| |||| |||||||| |||||| |||| ||| |||||||||| |||    
T  40851791 accatcattaaatcatattttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaatacat-aaatggagaggatcctaa 40851693  T
Q  429 ccc 431  Q
    |||    
T  40851692 ccc 40851690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 229 - 412
Target Start/End: Complemental strand, 2230102 - 2229918
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||| || | |||| ||||||||||||  |     
T  2230102 gggtgaacatcctctccatttggcaaaataattggagttttgcaagttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtggttt 2230003  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||||| ||||||  || |||||| |||| ||||||||||||||||| ||||  ||||||| ||||||||||||||    
T  2230002 ccaccatcattaatta-tattttacttttttcaaaattttatgtgtctttatctctccaaattaaagaaatagagaaacacataaa 2229918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 253 - 407
Target Start/End: Complemental strand, 27033746 - 27033591
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattatttt- 351  Q
    ||||||||||||| |||| |||||||||| |||||||||||| |||||| |||| |||| ||||||||||||  | |||||||||||||||| ||||||     
T  27033746 aaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtggatcccaccatcattaatta-tatttta 27033648  T
Q  352 -ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacac 407  Q
     || ||||||||||| ||||||||||||||||| |||| |||||||| |||||||||    
T  27033647 cttttttcaagattttatgtgtctttatctctccaaattgaagaaatggagaaacac 27033591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 232 - 412
Target Start/End: Complemental strand, 46167509 - 46167328
Alignment:
Q  232 tgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtacca 331  Q
    |||| |||||||  |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||  |||| |||| ||||||||||||  | | |    
T  46167509 tgaacatcctctccatttagcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtggatccta 46167410  T
Q  332 ccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||| |||||||| ||||||  || ||||||||||  || ||||||||||||||||||| |||||||| || |||||||||||    
T  46167409 ccattattaatta-tattttacttttttcaagattatatttgtctttatctctctaaattgaagaaatggaaaaacacataaa 46167328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 409
Target Start/End: Complemental strand, 34373950 - 34373769
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| || ||||  |||||||||||||||| | | |||| |||||||||| ||||||||||||||||||| |||| |||| ||||||||| |  ||     
T  34373950 gggtgaagattctctccatttggcaaaataaattgtgttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaattaggtc 34373851  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacat 409  Q
    |||||||||||||||| ||||||  || ||||||||||| ||||||||||||||||| |||| ||| ||||  ||||||||||    
T  34373850 ccaccatcattaatta-tattttacttttttcaagattttatgtgtctttatctctccaaattgaaaaaatgaagaaacacat 34373769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 247 - 412
Target Start/End: Original strand, 34373559 - 34373725
Alignment:
Q  247 tttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattatt 346  Q
    ||||||||||||||| ||| |||| |||||  | | |||||||||| |||||||| |||| |||| |||||||||||| || |||||||||||||||| |    
T  34373559 tttggcaaaataaatagagttttgcaagttccatagagatagacactaaaaatagatggtgggtcctaccactaagtgggtcccaccatcattaatta-t 34373657  T
Q  347 atttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||  || |||||||||||  ||| |||||||||||| |||| |||||||| ||||||||||||||    
T  34373658 attttacttttttcaagattttttgtctctttatctctccaaattgaagaaatggagaaacacataaa 34373725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 243 - 429
Target Start/End: Original strand, 550787 - 550972
Alignment:
Q  243 tttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaat 342  Q
    ||||||||||||||||||||||| |||| || ||||||||||||| | ||||||||||| |||| | || || || |||||| || ||||||| |||| |    
T  550787 tttatttggcaaaataaatggag-tttgcaatttggagaaagatatatacaaaaaatagatggtggatcctatcattaagtgggtcccaccattattatt 550885  T
Q  343 tattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatcttaac 429  Q
    ||| |||||  || ||| || |||| |||| |||||||||||| ||||||||||||| |||||| |||| ||| |||||||||||||||    
T  550886 tat-attttacttttttaaaaattttatgtatctttatctctccaaatggaagaaatggagaaagacat-aaatggagaggatcttaac 550972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 24754777 - 24754681
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtg 324  Q
    |||||||| |||||||  |||||||||||||||||||| |||  |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||    
T  24754777 cgggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtg 24754681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 24763774 - 24763678
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtg 324  Q
    |||||||| |||||||  |||||||||||||||||||| |||  |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||    
T  24763774 cgggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtg 24763678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 228 - 412
Target Start/End: Complemental strand, 48084940 - 48084754
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaa-aatagttggtaggtcataccactaagtgag 326  Q
    ||||| || |||||||  |||||  ||||||||| ||| |||| || |||| || |||||||||||||| ||||| |||| ||||  ||||||||||| |    
T  48084940 cgggttaagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtggg 48084841  T
Q  327 taccaccatcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    | ||| |||||||||||||| ||| ||| |||||| ||||  ||||||| |||||||| |||||| |||||| |||||  |||||||    
T  48084840 tcccatcatcattaattattttttatttttttcaaaattttgtgtgtctatatctctccaaatggtagaaatggagaaggacataaa 48084754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 412
Target Start/End: Complemental strand, 12403061 - 12402900
Alignment:
Q  253 aaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt-- 350  Q
    ||||||||| ||| |||| |||||||||| ||||||| | ||||| ||| |||| | |  ||||||||||||||| ||||||| |||||||||  |||      
T  12403061 aaaataaatagagttttgcaagttggagagagatagatataaaaattagatggtggattctaccactaagtgagtcccaccattattaattatattttac 12402962  T
Q  351 tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattg-agaaacacataaa 412  Q
    ||| ||| ||||||| ||||||||||||||||| ||||  |||||| || |||||||||||||    
T  12402961 ttttttttaagattttatgtgtctttatctctccaaat-taagaaaatgaagaaacacataaa 12402900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 31523670 - 31523790
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||| |||| ||  |||||||| || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  31523670 ttggagagagatagacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 31523760  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||| |||| ||||||    
T  31523761 ttatctctctaaatggaacaaatggagaaa 31523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 402
Target Start/End: Complemental strand, 29586455 - 29586282
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagt 327  Q
    ||||| || |||||||| |||| ||| ||||||||||| | || |  ||||||| ||||||||||| ||||||| | ||| ||| ||| | |||||| ||    
T  29586455 cgggtaaagatcctcttcatttagcataataaatggag-tatgcagtttggagagagatagacacataaaatagatagtaagtcttactattaagtgggt 29586357  T
Q  328 accaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgaga 402  Q
      ||||||||||||||| | |||  | |||| |  |||  |||||||||||||||||||||||| ||||| ||||    
T  29586356 ctcaccatcattaattactttttagtttttcgaatttttttgtgtctttatctctctaaatggatgaaatggaga 29586282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 2310379 - 2310261
Alignment:
Q  278 gagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattt--tttctttcaagatttgatgtgtctt 375  Q
    |||||| ||| | |||||||||||   ||||||||||  || |||||| | ||| |||||||||||||| |||  ||||||| || ||||  ||||||||    
T  2310379 gagaaaaatacatacaaaaaataggatgtaggtcatattaccaagtgaatcccatcatcattaattattttttactttctttaaa-attt--tgtgtctt 2310283  T
Q  376 tatctctctaaatggaagaaat 397  Q
    ||||||||||||||||||||||    
T  2310282 tatctctctaaatggaagaaat 2310261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 398
Target Start/End: Original strand, 566747 - 566899
Alignment:
Q  246 atttggcaaaataaatggagatttgtaagttggagaaagatagacac-aaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaatta 344  Q
    |||||||||||||||||||| |||| || ||||||| ||||||| || ||||||||  |||  | || || || |||||| || ||||| | |||| |||    
T  566747 atttggcaaaataaatggag-tttgcaatttggagagagatagatacaaaaaaatatatggcggatcctatcattaagtgggtcccacctttattattta 566845  T
Q  345 ttattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaatt 398  Q
    |  |||  | ||||||||||| |||| | |||||||||| ||||||||||||||    
T  566846 tattttactttttcaagattttatgtatttttatctctccaaatggaagaaatt 566899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 404
Target Start/End: Complemental strand, 42613145 - 42613033
Alignment:
Q  283 agatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtctttatctct 382  Q
    ||||||||| ||||||||  |||| |||| || ||||||||| || |||||||||||||||||  ||||| ||       ||| ||||||||||||||||    
T  42613145 agatagacaaaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtctttatctct 42613055  T
Q  383 ctaaatggaagaaattgagaaa 404  Q
    |||||| ||| |||| ||||||    
T  42613054 ctaaatagaacaaatggagaaa 42613033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 49679272 - 49679392
Alignment:
Q  275 ttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtct 374  Q
    ||||||| ||||||||||||||||||  |||  |||| || |||||| || || |||||||||||||||||  ||||| ||       ||| ||||||||    
T  49679272 ttggagagagatagacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattat--tttttact-------ttttatgtgtct 49679362  T
Q  375 ttatctctctaaatggaagaaattgagaaa 404  Q
    ||||||||||||||| || |||| ||||||    
T  49679363 ttatctctctaaatgaaacaaatggagaaa 49679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 404
Target Start/End: Complemental strand, 3009229 - 3009192
Alignment:
Q  367 atgtgtctttatctctctaaatggaagaaattgagaaa 404  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  3009229 atgtgtctttatctctctaaatggaacaaatggagaaa 3009192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 4699038 - 4699067
Alignment:
Q  368 tgtgtctttatctctctaaatggaagaaat 397  Q
    ||||||||||||||||||||||||||||||    
T  4699038 tgtgtctttatctctctaaatggaagaaat 4699067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 24647957 - 24647905
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggaga 281  Q
    ||||||| |||||||  ||||| |||||||||||||| |||| ||||||||||    
T  24647957 gggtgaagatcctctccatttgacaaaataaatggagttttgcaagttggaga 24647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 431
Target Start/End: Complemental strand, 208182 - 207980
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||  |||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||| |||| |||| |||||||||||| ||     
T  208182 gggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtc 208083  T
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    ||| |||||||||||| ||||||  || ||| ||||||| ||||||||||||||||| |||| |||||||| ||||||||||| ||| |||||||||| |    
T  208082 ccatcatcattaatta-tattttactttttttaagattttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggatcct 207985  T
Q  427 aaccc 431  Q
    |||||    
T  207984 aaccc 207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 426
Target Start/End: Original strand, 9157 - 9351
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| ||| |||  ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |||| ||||  |||||||||||  |     
T  9157 gggtgaagatcatctccatttggcaaaataaatggagatttgcaagttggagagagatagacacagaaaatagatggtgggtccaaccactaagtggatt 9256  T
Q  329 ccaccatcattaattattattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagaggatctt 426  Q
    |||||||||||||||| |||| ||| ||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  9257 ccaccatcattaatta-tattattt-ttttaagatttcatgtgcctttatctctccaaatggaagaaattgagaaacacat-aaatggagaggatctt 9351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 16353 - 16537
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagta 328  Q
    ||||||| |||||||   || |||||||||||||||| |||| |||||||||| ||||||||||||||||||  |||| |||| |||||||||||| ||     
T  16353 gggtgaagatcctctccgttaggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtc 16452  T
Q  329 ccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||| ||||||||||||| | || ||| ||||||||||| ||||   |||||||||| |||| |||||||| ||||||||||||||    
T  16453 ccatcatcattaattatattttatttttttcaagattttatgtaattttatctctccaaattgaagaaatggagaaacacataaa 16537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 228 - 431
Target Start/End: Complemental strand, 7271 - 7064
Alignment:
Q  228 cgggtgaaaatcctctttatttggcaaaataaat----ggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagt 323  Q
    |||||||| |||||||  ||||||||||||||||    |||| |||| |||||||||| ||||||||||||||||||| |||| |||| ||| | |||||    
T  7271 cgggtgaagatcctctccatttggcaaaataaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctactattaagt 7172  T
Q  324 gagtaccaccatcattaattat-tattttttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaaaaggagagga 422  Q
    | || ||||||||||||||||| | || ||| ||||||||||| || |||||||||||||  |||| ||||||||  |||||||||| ||| ||||||||    
T  7171 gggttccaccatcattaattatattttatttttttcaagattttatatgtctttatctctgcaaattgaagaaatgaagaaacacat-aaatggagagga 7073  T
Q  423 tcttaaccc 431  Q
    || ||||||    
T  7072 tcctaaccc 7064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 412
Target Start/End: Original strand, 22407 - 22582
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatc 336  Q
    |||||||  |||| ||||||||||||||| |||| || ||  | | ||||||||||||||||||| | || | || ||||||||||||||| |||| ||     
T  22407 atcctctgcatttagcaaaataaatggag-tttgcaatttacaaagagatagacacaaaaaatagatagtggatcctaccactaagtgagttccacaata 22505  T
Q  337 attaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    ||||||||| |||||  || ||||||||||| |||||| |||||||||||||||| ||||||| |||| | |||||||    
T  22506 attaattat-attttacttttttcaagattttatgtgtatttatctctctaaatgtaagaaatggagatagacataaa 22582  T

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Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 396
Target Start/End: Original strand, 6399 - 6559
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatc 336  Q
    ||||||| ||||| | |||||||||||   |||| |||||||| | ||| ||||||||||||||| |||| |||| ||| ||||| || |||| ||||||    
T  6399 atcctctctatttcgtaaaataaatgggattttgcaagttggaaagagacagacacaaaaaatagatggtgggtcctacaactaaatgggtacaaccatc 6498  T
Q  337 attaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaa 396  Q
    |||||||| ||||||  || || |||||||| ||||||||||||||||| |||| |||||||    
T  6499 attaatta-tattttactttttccaagattttatgtgtctttatctctcaaaattgaagaaa 6559  T

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Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 412
Target Start/End: Original strand, 73900 - 73980
Alignment:
Q  333 catcattaattattattt-tttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgagaaacacataaa 412  Q
    |||||||||||||  ||| ||| ||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||    
T  73900 catcattaattatattttatttttttcaagattttatgtgtttttatctctctaaattgaagaaatggagaaacacataaa 73980  T

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Target: scaffold0006; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 73821 - 73895
Alignment:
Q  237 atcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaatagttggtaggtc 311  Q
    ||||||| ||||||||||||||||||| | |||| |||||||||| |||||||| ||||| |||| |||| ||||    
T  73821 atcctctctatttggcaaaataaatggtgttttgcaagttggagagagatagacgcaaaatatagatggtgggtc 73895  T

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Target: scaffold0456 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 13715 - 13641
Alignment:
Q  329 ccaccatcattaattattatttt--ttctttcaagatttgatgtgtctttatctctctaaatggaagaaattgaga 402  Q
    ||||||||||||||||| |||||  || ||||||||||| ||||||||||||||||| |||| |||||||| ||||    
T  13715 ccaccatcattaattat-attttacttttttcaagattttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

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Target: scaffold0456; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 13799 - 13730
Alignment:
Q  229 gggtgaaaatcctctttatttggcaaaataaatggagatttgtaagttggagaaagatagacacaaaaaa 298  Q
    ||||||| ||| |||  |||||||||||||||| ||| ||||  ||||||||| ||||||||| ||||||    
T  13799 gggtgaagatcttctccatttggcaaaataaatagagttttgctagttggagagagatagacaaaaaaaa 13730  T

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Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 17311 - 17421
Alignment:
Q  278 gagaaagatagacacaaaaaatagttggtaggtcataccactaagtgagtaccaccatcattaattattattttttctttcaagatttgatgtgtcttta 377  Q
    |||| ||||||||||||||||||  || | |||| || ||||||||| || |||||||||||||||||  ||||| ||       ||| |||||||||||    
T  17311 gagagagatagacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattat--tttttact-------ttttatgtgtcttta 17401  T
Q  378 tctctctaaatggaagaaat 397  Q
    ||||||||||||||| ||||    
T  17402 tctctctaaatggaacaaat 17421  T

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Target: scaffold0712 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 3139 - 3175
Alignment:
Q  367 atgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  3139 atgtgtctttatctctctaaatggaggaaatggagaa 3175  T

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Target: scaffold0709 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Original strand, 3159 - 3195
Alignment:
Q  367 atgtgtctttatctctctaaatggaagaaattgagaa 403  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  3159 atgtgtctttatctctctaaatggaggaaatggagaa 3195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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