View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_15 (Length: 426)
Name: NF9027_low_15
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 28059244 - 28058918
Alignment:
| Q |
1 |
cgatttgatcatattcctctacattgcctataacgctatagagacgttattaaacaagaccggaaggatccatgtgatattactgggctggagaagttgt |
100 |
Q |
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| T |
28059244 |
cgatttgatcatattcctctacattgcctataacgctatagagacgttattaaacaagaccggaaggatccatgtgatattactgggctggagaagttgt |
28059145 |
T |
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| Q |
101 |
ttgtcattttcattttgatcattgatggaagttttggtgggacaactatggatagatgtaggtgtttgatcttaaaaatcattaatgaagtatatgtttg |
200 |
Q |
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| T |
28059144 |
ttgtcattttcattttgatcattgatggaagttttggtgggacaactatggatagatgtaggtgtttgatcttaaaaatcattaatgaagtatatgtttc |
28059045 |
T |
|
| Q |
201 |
atgattgttgctgcttttgtttgtttaactctgcaatcattcttacaatgttaaattttgtatata-ttctttttgtagtcattaattagttgagatcct |
299 |
Q |
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| T |
28059044 |
atgattgttgctgcttttgtttgtttaactctgcaatcattcttacaaagttaaattttgtatatatttctttttgtagtcattaattagttgagatcct |
28058945 |
T |
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| Q |
300 |
gtcaaattttatgaacatttatgaaaa |
326 |
Q |
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| T |
28058944 |
gtcaaattttatgaacatttatgaaaa |
28058918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 28058846 - 28058764
Alignment:
| Q |
331 |
atgcatgaatatcttatatttcaatggatt-gctcaaacacatgttttttaatgaaagtttagtgacattcaaagaggaagat |
412 |
Q |
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| T |
28058846 |
atgcatgaatatcttatatttcaatggatttgctcaaacacatgttttttaatgaaagtttagtgacattcaaaaaggaagat |
28058764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 28067443 - 28067387
Alignment:
| Q |
82 |
actgggctggagaagttgtttgtcattttcattttgatcattgatggaagttttggt |
138 |
Q |
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| T |
28067443 |
actgggctggagatgttgattgtgatttttcttttggtcattgatggaagttttggt |
28067387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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