View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_16 (Length: 391)
Name: NF9027_low_16
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 192 - 384
Target Start/End: Original strand, 46861582 - 46861774
Alignment:
| Q |
192 |
gacctaagacttttgtcatataaggtcacaaatatatacctaaaaacttaaatgaaataacaaattccaaatcccagccatcatgtccattcattatgtg |
291 |
Q |
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| T |
46861582 |
gacctacgacttttgtcatataaggtcacaaatatatacctaaaaacttaaatgaaataacaaattccaaatcccagccatcatgtccattcattatgtg |
46861681 |
T |
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| Q |
292 |
tgtatggatatatgttttctattagaaacctccttgccagcgccaactcagttttgcatgcatttacacttcctccttcattagagaacacga |
384 |
Q |
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| T |
46861682 |
tgtatggatatatgttttctattagaaacctacttgccagcgccaactcagttttgcatgcatttacacttcctccttcattagagaacacga |
46861774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 46861350 - 46861525
Alignment:
| Q |
20 |
aatgctacacaacatttatccaaatgtgccaagaatccacataataagcataagcctcttaattgttcatttaacaatcttccattttacccaccttgcc |
119 |
Q |
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| T |
46861350 |
aatgctacacaacatttatccaaatgtgccaagaatccacataataagcataagcctcttaattgttcatttaacaatcttccattttacccaccttgcc |
46861449 |
T |
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| Q |
120 |
tcacattatctcctttcgtagtcgttatatattttccttttttggacttgacactcgtatatgtcttccacggacc |
195 |
Q |
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| T |
46861450 |
tcacattatctcctttcgtagtcgttatatattttccttttttggacttgacactcgtatatgtcttccacggacc |
46861525 |
T |
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