View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_19 (Length: 378)
Name: NF9027_low_19
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 153 - 360
Target Start/End: Original strand, 33376580 - 33376787
Alignment:
| Q |
153 |
ttagcctcaaaatcatcttacaaagaatattgtgcttccatcatcccagaaacaactccaacaacaaagaaattcaactctttccctttaagtgatcaca |
252 |
Q |
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| T |
33376580 |
ttagcctcaaaatcatcttacaaagaatattgtgcttccatcatcccagaaacaactccaacaacaaagaaattcaactctttccctttaagtgatcaca |
33376679 |
T |
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| Q |
253 |
acacaggttactacataggaggtgatagtatcatcaacaatgatgcttcttggaacagattctccttatactttccaccaagaaacacatatgcaacttc |
352 |
Q |
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| T |
33376680 |
acacaggttactacataggaggtgatagtatcatcaacattgatgcttcttggaacagattctccttatactttccaccaagaaacacatatgcaacttc |
33376779 |
T |
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| Q |
353 |
acatcctc |
360 |
Q |
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| T |
33376780 |
acatcctc |
33376787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 33376447 - 33376518
Alignment:
| Q |
18 |
ataacaggcaatattcattcttctttttattcatctaactcttttctaataaacaagttcagaatagtcatgaa |
91 |
Q |
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| T |
33376447 |
ataacaggcaatactgattcttgcttt-attcatctacc-cttttttaataaacaagttcagaatagtcatgaa |
33376518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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