View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_21 (Length: 373)
Name: NF9027_low_21
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 21489374 - 21489033
Alignment:
| Q |
11 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
110 |
Q |
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| T |
21489374 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataat |
21489275 |
T |
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| Q |
111 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
210 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21489274 |
tgggatcaaacactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttgaacccac |
21489175 |
T |
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| Q |
211 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21489174 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagatgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
21489075 |
T |
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| Q |
311 |
gtaacgaagctagcgacatgtccagtagtactatcccaaata |
352 |
Q |
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| T |
21489074 |
gtaacgaagctagcgacatgtccagtagtactatcccaaata |
21489033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 21483026 - 21482694
Alignment:
| Q |
14 |
attatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataattgg |
113 |
Q |
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| T |
21483026 |
attatacttactttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgg |
21482927 |
T |
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| Q |
114 |
gatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccacaga |
213 |
Q |
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| T |
21482926 |
gatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgaacctccaga |
21482833 |
T |
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| Q |
214 |
gttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaagta |
313 |
Q |
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|||| ||||||| ||||| |||||||||||||||||||||| || ||||||||||| |||||| ||||| |||||||||||||||| ||||||| |
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| T |
21482832 |
gttgggaggaatgacggtatcttgtggtgcaagaaagaagatgactccatcggctttattataatcttgaatgtcctcaaccgtgaaggagaaggaagcg |
21482733 |
T |
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| Q |
314 |
acgaagctagcgacatgtccagtagtactatcccaaata |
352 |
Q |
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| T |
21482732 |
acgaagctagcaacatgtccagtagtactatcccaaata |
21482694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 21493181 - 21492846
Alignment:
| Q |
11 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggaggatattactgagttaacatcaattccaatatgtgcataat |
110 |
Q |
| |
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||||||||| ||||||| || ||||||||||| ||| | ||||||| |||||| ||| ||| |||| ||||||||||||||||||||||||| ||| | |
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| T |
21493181 |
tagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatcaattccaatatgtggatact |
21493082 |
T |
|
| Q |
111 |
tgggatcaaacacttgcttattggcatgactatcaaactcgacaccaacaaattgattgaaagcctttttcccatcaactactccgagttttgaacccac |
210 |
Q |
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|||||||| || | |||||||| | |||||||| ||||||||||||||||||||||| |||| | |||||||||||||||| | | ||| | |
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| T |
21493081 |
tgggatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccgagatatttacctcc |
21492988 |
T |
|
| Q |
211 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagacgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
310 |
Q |
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||||||| ||||||| |||||||| |||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||| |||||| |
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| T |
21492987 |
agagttgggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggctggcatataaccttgataatcctcaacgacgaaggagaaggaa |
21492888 |
T |
|
| Q |
311 |
gtaacgaagctagcgacatgtccagtagtactatcccaaata |
352 |
Q |
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| | ||||||||| |||||||| ||||||| |||||||||| |
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| T |
21492887 |
gcgatgaagctagcaacatgtccggtagtacgatcccaaata |
21492846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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