View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_27 (Length: 323)
Name: NF9027_low_27
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 44188332 - 44188622
Alignment:
| Q |
15 |
ctgtgctttgattgttgtgacagtaagtaatatgagaagaaactgcatgactccagtctccaggctctggatgtggagtgtggaccttctatcatcacta |
114 |
Q |
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| T |
44188332 |
ctgtgctttgattgttgtgacagtaagtaatatgagaagaaactgcatgactccagtctccagcctctggatgtggagtgtggaccttctatcatcacta |
44188431 |
T |
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| Q |
115 |
tcataggtccaattagcattacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaaaga |
214 |
Q |
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| T |
44188432 |
tcataggtccaattagcattacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaaaga |
44188531 |
T |
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| Q |
215 |
attcttttgacaacattctaatgagattgcaaatgcagtagttgggacataatttgccataccttgttcatacaataaccaatctcgggtc |
305 |
Q |
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| T |
44188532 |
attcttttgacaacattctaatgagattgcaaatgcagtagttgggacataatttgccataccttgttcatacaataaccaatctcgggtc |
44188622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 1329584 - 1329761
Alignment:
| Q |
29 |
ttgtgacagtaagtaatatgagaagaaactgcatgactccagtctccaggctctggatgtggagtgtg--gaccttctatcatcactatcataggtccaa |
126 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
1329584 |
ttgtgacagtaagtaatatgagtagaaactacatgactccag-------gctctggatgtggagtgttttgaccttttatcatcactatcataggtccaa |
1329676 |
T |
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| Q |
127 |
ttagcattacaaaatgctgggacactaaggcaagtttgttggctgctaaacaagaccaatatcagtggtccgtttgagatatcaa |
211 |
Q |
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| T |
1329677 |
ctagcattacaaaatgctggcagactaaggcaagtttgttggctgctaaacgagaccaaaattagtggtcccattgagatatcaa |
1329761 |
T |
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