View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_3 (Length: 820)
Name: NF9027_low_3
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 404 - 801
Target Start/End: Complemental strand, 40326895 - 40326498
Alignment:
| Q |
404 |
tgataatatttttcataaaaaggagtaaacatgaattgtgcaactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactc |
503 |
Q |
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| T |
40326895 |
tgataatatttttcataaaaaggagtaaacatgaattgtgcaactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactc |
40326796 |
T |
|
| Q |
504 |
aagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactat |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326795 |
aagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactat |
40326696 |
T |
|
| Q |
604 |
ttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttagcatagtgaccaattcatc |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40326695 |
ttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttagcatagtgaccaattcatc |
40326596 |
T |
|
| Q |
704 |
tagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcc |
801 |
Q |
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| T |
40326595 |
tagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttcattcc |
40326498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 200 - 411
Target Start/End: Complemental strand, 40327444 - 40327233
Alignment:
| Q |
200 |
attgaatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagacttgttaattcatg |
299 |
Q |
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| T |
40327444 |
attgaatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagacttgttaattcatg |
40327345 |
T |
|
| Q |
300 |
tattgcacaaagttttcatattatctattaatcaaagttcattcagttaaaataatatataaaattaaaattaaccttcacaaaatagaaatttgcactt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40327344 |
tattgcacaaagttttcatattatctattaatcaaagttcattcggttaaaagaatatataaaattaaaattaaccttcacaaaattgaaatttgcactt |
40327245 |
T |
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| Q |
400 |
gaactgataata |
411 |
Q |
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||||||| |||| |
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| T |
40327244 |
gaactgaaaata |
40327233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 40327680 - 40327493
Alignment:
| Q |
15 |
ttattcttcattagatgcagtgatatcaaaacttgtgcatatatatttataaagagacggtactatacaatttcagaaaacaaaatcaccgaaaatctta |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40327680 |
ttattcttcattagatgcagtcatatcaaaacttgtgcatatatatttataaaaagacggtactatacaatttcagaaaacaaaatcaccgaaaatctta |
40327581 |
T |
|
| Q |
115 |
aactaattatcgatcaaggaacatggaacgtgttgaaaacatcttataacacttacaacttcacatgattcatggaatatttatcatt |
202 |
Q |
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| T |
40327580 |
aactaattatcgatcaaggaacatgaaacgtgttgaaaacaacttataacacttacaacttcacatgattcatggaatatttatcatt |
40327493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 502 - 796
Target Start/End: Complemental strand, 40283869 - 40283575
Alignment:
| Q |
502 |
tcaagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataact |
601 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||| || |||||||| ||||||| || ||| || |
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| T |
40283869 |
tcaagttagcaacttcagataaagctgacctccattcctttaccttctcagagtcatttccaaactcttttttatgcttagccatggctcttttatagct |
40283770 |
T |
|
| Q |
602 |
atttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttagcatagtgaccaattca |
701 |
Q |
| |
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||| ||||||| ||||| || |||||||||||||||||||||||||||| || |||||||||| ||| || ||||| || ||||||||||||||| |
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| T |
40283769 |
gtttttctgatgccttacatcggacggttctattttgtaaaagattggcaaaaccttttggttcttcatctttttacacttaagaatagtgaccaattca |
40283670 |
T |
|
| Q |
702 |
tctagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttc |
796 |
Q |
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| T |
40283669 |
tctagacaccaaggagaatctgcaaagttttcagaaaaaacaacaattgaaatccttgatgcctcaattgctttgactagagatgatgaaatttc |
40283575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 497 - 796
Target Start/End: Complemental strand, 40311522 - 40311223
Alignment:
| Q |
497 |
tccactcaagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttcca |
596 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| | | | ||| ||| ||||||| |||||| || | | || |||| ||| || || || |
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| T |
40311522 |
tccactcaagctagcaacttcaagtaaagctgacctccatatctgtaacttctcaaagtcattaccaaacctttttacttgtttagccattcctctttca |
40311423 |
T |
|
| Q |
597 |
taactatttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttagcatagtgacca |
696 |
Q |
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||||| ||| ||||||| ||||| || ||||||||||| ||||| || ||||||||||||||||||||| ||| || ||||| || |||||||||| |
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| T |
40311422 |
taactgtttttctgatgccttacatcggacggttctattttataaaaaatcggcaaaatctgttggttcttcatctttttacacttaagaatagtgacca |
40311323 |
T |
|
| Q |
697 |
attcatctagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagagatgatgaaatttc |
796 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40311322 |
attcatctagacaccaagaagaatgtgcaatttttttagagaaaacaataactgaaatccttgatgcctcaattgctttgattagagaagatgaaatttc |
40311223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 40311780 - 40311698
Alignment:
| Q |
204 |
aatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagac |
286 |
Q |
| |
|
|||||||||| ||||| ||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
40311780 |
aatttgacaccattaaatttggctctttactctttccacgatcgtttggactagtttatattcgtacctgcaaaattaaagac |
40311698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 698 - 777
Target Start/End: Complemental strand, 40409274 - 40409195
Alignment:
| Q |
698 |
ttcatctagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttga |
777 |
Q |
| |
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|||||| |||||||| | |||| | ||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
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| T |
40409274 |
ttcatcaagacaccatgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgctttga |
40409195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 774
Target Start/End: Complemental strand, 40406565 - 40406489
Alignment:
| Q |
698 |
ttcatctagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctt |
774 |
Q |
| |
|
|||||| |||||||| | |||| | ||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
40406565 |
ttcatcaagacaccacgtggaatatccaaagttttcagacaaaacaacaattgaaagccttgatttttcaattgctt |
40406489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 777
Target Start/End: Original strand, 40256869 - 40256948
Alignment:
| Q |
698 |
ttcatctagacaccagggagaatctgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttga |
777 |
Q |
| |
|
|||||| |||||||| | |||| |||||||||||| || ||||||| ||| |||| ||||||||| |||||||| |||| |
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|
| T |
40256869 |
ttcatcgagacaccatgatgaatatgcaaagttttcggataaaacaataatggaaagccttgatgcttcaattgcattga |
40256948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 729 - 783
Target Start/End: Complemental strand, 40362501 - 40362447
Alignment:
| Q |
729 |
ttttcagagaaaacaacaattgaaatccttgatgcctcaattgctttgattagag |
783 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| ||||||||||||| ||||| |
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|
| T |
40362501 |
ttttcagacaaaacaacaattgaaagccttgatttttcaattgctttgagtagag |
40362447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 726 - 760
Target Start/End: Complemental strand, 40405455 - 40405421
Alignment:
| Q |
726 |
aagttttcagagaaaacaacaattgaaatccttga |
760 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
40405455 |
aagttttcagagagaacaacaattgaaatccttga |
40405421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 771
Target Start/End: Complemental strand, 40278027 - 40277978
Alignment:
| Q |
722 |
tgcaaagttttcagagaaaacaacaattgaaatccttgatgcctcaattg |
771 |
Q |
| |
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|||| |||||||||| |||||||||||||||| ||||| ||| ||||||| |
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| T |
40278027 |
tgcatagttttcagacaaaacaacaattgaaagccttgctgcttcaattg |
40277978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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