View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9027_low_36 (Length: 248)
Name: NF9027_low_36
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 11146313 - 11146072
Alignment:
| Q |
7 |
atggacatcctcacaactcttgaaagtttgagtctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaa |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11146313 |
atggacaccctcacaactcttgaaagtttgagtctccgccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaaa |
11146214 |
T |
|
| Q |
107 |
gaatttctattacatctgtgagaataacaaagatgccgccattaattaaat---ggggtttccaaagccttacttctcttacaaatttgaatattaaaga |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
11146213 |
caatttctattgcatctgtgagaataacaaagatgccgccattaattgaatgggggggtttccaaagccttacttctcttacaaatttgaaaattgaaga |
11146114 |
T |
|
| Q |
204 |
taatgatgatattgttaacaacttgttgaaggagcaattgct |
245 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
11146113 |
taatgatgatattgttcacaccttgttgaaggagcaattgct |
11146072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 11128489 - 11128247
Alignment:
| Q |
6 |
gatggacatcctcacaactcttgaaagtttgagtctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaa |
105 |
Q |
| |
|
|||| ||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11128489 |
gatgaacaccctcaccactcttgaaattttgtatctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaa |
11128390 |
T |
|
| Q |
106 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattaaatggggtttccaaagccttacttctcttacaaatttgaatattaaagata |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||| | |
|
|
| T |
11128389 |
acaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttctctttcatatttgtatattaaagaga |
11128290 |
T |
|
| Q |
206 |
atgatgatattgttaacaacttgttgaaggagcaattgctgcc |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11128289 |
atgatgatattgttaacaccttgttgaaggagcaattgctgcc |
11128247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 11157480 - 11157241
Alignment:
| Q |
6 |
gatggacatcctcacaactcttgaaagtttgagtctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaa |
105 |
Q |
| |
|
|||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11157480 |
gatggacaccctcaccgctcttgaaagattgtatctccaccatcttccaaaactagagtttgcactatatgaaggagttttcttacctcccaaattacaa |
11157381 |
T |
|
| Q |
106 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattaaatggggtttccaaagccttacttctcttacaaatttgaatattaaagata |
205 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
11157380 |
acaatttctattacatctgtgagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata |
11157281 |
T |
|
| Q |
206 |
atgatgatattgttaacaacttgttgaaggagcaattgct |
245 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
11157280 |
atgatgatgttgttcacaccttgttgaaggagcaattgct |
11157241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 10891915 - 10892157
Alignment:
| Q |
6 |
gatggacatcctcacaactcttgaaagtttgagtctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaa |
105 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||| || ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
10891915 |
gatggacaccctcacctctcttgaatgtttgagtctccatcagcttccaaaactagagtttgcaccatgcgaaggagttttcttacctcccaaattacaa |
10892014 |
T |
|
| Q |
106 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattaaatggggtttccaaagccttacttctcttacaaatttgaatattaaagata |
205 |
Q |
| |
|
| |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||||||| |
|
|
| T |
10892015 |
accatttctattaaatctgtgagaataacaaaaatgccgccattaattgaatggggtttccaaagccttacttatctttcaaaattgtatattaaagata |
10892114 |
T |
|
| Q |
206 |
atgatgatattgttaacaacttgttgaaggagcaattgctgcc |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10892115 |
atgatgatattgttaacaccttgttgaaggagcaattgctgcc |
10892157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 8863895 - 8864134
Alignment:
| Q |
6 |
gatggacatcctcacaactcttgaaagtttgagtctccaccatcttccaaaactagagttgtcactatgtgaaggagttttcttacctcccaaattacaa |
105 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| | || |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
8863895 |
gatggacaccctcaccactcttgaaagattgcatttctaccatcttccaaaacttgagtttgcactatatgaaggagttttcttacctcccaaattgcaa |
8863994 |
T |
|
| Q |
106 |
agaatttctattacatctgtgagaataacaaagatgccgccattaattaaatggggtttccaaagccttacttctcttacaaatttgaatattaaagata |
205 |
Q |
| |
|
| ||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
8863995 |
acaatttatattacatctgtaagaataacaaagatgccgccattaattgaatggggtttccaaagccttacttatctttcaaatttgtatattaaagata |
8864094 |
T |
|
| Q |
206 |
atgatgatattgttaacaacttgttgaaggagcaattgct |
245 |
Q |
| |
|
|||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
8864095 |
atgatgatgttgttcacaccttgttgaaggagcaattgct |
8864134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 12131049 - 12131089
Alignment:
| Q |
208 |
gatgatattgttaacaacttgttgaaggagcaattgctgcc |
248 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
12131049 |
gatgatattgttaacaccttgttgaaggagcagttgctgcc |
12131089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 248
Target Start/End: Original strand, 13335653 - 13335746
Alignment:
| Q |
155 |
aatggggtttccaaagccttacttctcttacaaatttgaatattaaagataatgatgatattgttaacaacttgttgaaggagcaattgctgcc |
248 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||| |||| ||||| || | | |||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
13335653 |
aatggggtctccaacatcttacttctctttcaagtttgtatattggaggtgacgatgatattgttaacaccttgctgaaggagcggttgctgcc |
13335746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University