View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9027_low_39 (Length: 241)
Name: NF9027_low_39
Description: NF9027
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9027_low_39 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 8342658 - 8342435
Alignment:
| Q |
18 |
atagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8342658 |
atagctcctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagtggttatcaaaagcttc |
8342559 |
T |
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| Q |
118 |
aaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8342558 |
aaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttg |
8342459 |
T |
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| Q |
218 |
ccaaaatcatgatgaatggtacct |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
8342458 |
ccaaaatcatgatgaatggtacct |
8342435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 241
Target Start/End: Complemental strand, 26728248 - 26728103
Alignment:
| Q |
96 |
tcaagttgttatcaaaagcttcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaatt |
195 |
Q |
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|||||||||||||||||||| ||||| | | ||||||||||||| ||||||||||||||||||| |||||||||||| |||| | ||||| | || ||| |
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| T |
26728248 |
tcaagttgttatcaaaagctgcaaatttttgcaaggtgcatatactcccaatggattttgggatcttgccttctagactgttgtctgagagttcgagatt |
26728149 |
T |
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| Q |
196 |
cacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct |
241 |
Q |
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| T |
26728148 |
cacaagtgaatgcattatgttgccaaaatcatcaggaatagtacct |
26728103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 11544436 - 11544651
Alignment:
| Q |
26 |
tgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttcaaatctct |
125 |
Q |
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|||| |||||| ||||||| ||||| | || |||||||||||||||||| || ||||||| |||| |||||| ||||||| |||||||||| || |
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| T |
11544436 |
tgtaacgaggaagcatttccaatgcatcgtgaatagttattatggatgataaaatctgaaatccctccactcaagcggttatcacgagcttcaaatgact |
11544535 |
T |
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| Q |
126 |
ccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatc |
225 |
Q |
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| T |
11544536 |
gcaaggtgcatatgtttccaatggattttgggatcttgccttctagactgttctctgagagatagagatgcacaagtgattgcattacgttgccaaaatc |
11544635 |
T |
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| Q |
226 |
atgatgaatggtacct |
241 |
Q |
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|| | ||||||||||| |
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| T |
11544636 |
atcaggaatggtacct |
11544651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 44612682 - 44612557
Alignment:
| Q |
116 |
tcaaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgt |
215 |
Q |
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|||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||| | | ||||| || | | ||||| ||||||||| ||| |
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| T |
44612682 |
tcaaatgtctccaaggtgcaaatattcccaattgattttgggatcttgccttctagatagttgcttgtgagattgagacttacaagcgaatgcattatgt |
44612583 |
T |
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| Q |
216 |
tgccaaaatcatgatgaatggtacct |
241 |
Q |
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| T |
44612582 |
ttccaaaatcattaggaatggtacct |
44612557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 16818296 - 16818079
Alignment:
| Q |
24 |
cctgtagcgaggatacatttccgatgcaatgagagtagttattatggatgatagaacctgaaatttctccgctcaagttgttatcaaaagcttcaaatct |
123 |
Q |
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||||||| |||||||||||||| |||| || | | |||||||||||||||| || ||||||| || || ||||||| || |||| ||| |||| |
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| T |
16818296 |
cctgtagtgaggatacatttccagtgcagcgataattgttattatggatgataaaatctgaaatctccccactcaagtggtaatcattagccctaaatgc |
16818197 |
T |
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| Q |
124 |
ctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaa |
223 |
Q |
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| ||||||||||||||||||||| ||||||||||| || ||||| ||| | || ||||||| || ||| ||||||||||||||| ||| |||||| |
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| T |
16818196 |
ttgcaaggtgcatatattcccaatcgattttgggatctttccttcaagactattgtaggagagatcgacattaacaagtgaatgcattatgtaaccaaaa |
16818097 |
T |
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| Q |
224 |
tcatgatgaatggtacct |
241 |
Q |
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|||| ||||||||||| |
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| T |
16818096 |
tcatctagaatggtacct |
16818079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 44145484 - 44145363
Alignment:
| Q |
117 |
caaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgtt |
216 |
Q |
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||||| ||| ||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||| | | | ||||| ||||||||| |||| |
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| T |
44145484 |
caaatgtctgcaaggtgcaaatattcccaattgattttgggatctttccttctagattgttgtatgagagatcaagacttacaagcgaatgcattatgtt |
44145385 |
T |
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| Q |
217 |
gccaaaatcatgatgaatggta |
238 |
Q |
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|||||||||| | |||||||| |
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| T |
44145384 |
tccaaaatcatcaggaatggta |
44145363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 227
Target Start/End: Complemental strand, 174394 - 174285
Alignment:
| Q |
118 |
aaatctctccaaggtgcatatattcccaatggattttgggatattgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttg |
217 |
Q |
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|||| ||||||||||||| |||||||||| ||||||||||| || ||||||| | |||| | ||||||| | | | ||||||||||||||| |||| |
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| T |
174394 |
aaatgtctccaaggtgcaaatattcccaactgattttgggatctttccttctaaactgttccatgagagatcaagacttacaagtgaatgcattatgttt |
174295 |
T |
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| Q |
218 |
ccaaaatcat |
227 |
Q |
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|||||||||| |
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| T |
174294 |
ccaaaatcat |
174285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 12249350 - 12249394
Alignment:
| Q |
145 |
aatggattttgggatattgccttctagattgttaccagagagata |
189 |
Q |
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|||||||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
12249350 |
aatggattttggaatattgccttgtagcttgttaccagatagata |
12249394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 29228084 - 29228164
Alignment:
| Q |
161 |
ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct |
241 |
Q |
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|||||||||||| |||||| || |||| || | | ||||||||||||||| |||| ||||||||| | ||||||||||| |
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| T |
29228084 |
ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacct |
29228164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 29341383 - 29341463
Alignment:
| Q |
161 |
ttgccttctagattgttaccagagagatagaaattcacaagtgaatgcattttgttgccaaaatcatgatgaatggtacct |
241 |
Q |
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|||||||||||| |||||| || |||| || | | ||||||||||||||| |||| ||||||||| | ||||||||||| |
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| T |
29341383 |
ttgccttctagactgttacttgacagattgagacttacaagtgaatgcattatgttcccaaaatcaccaggaatggtacct |
29341463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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